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Merge pull request #15632 from easybuilders/4.5.x
release EasyBuild v4.5.5
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,39 @@ | ||
| name = 'ABAQUS' | ||
| version = '2022' | ||
| local_hotfix = '2214' | ||
| versionsuffix = '-hotfix-%s' % local_hotfix | ||
|
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| homepage = 'https://www.simulia.com/products/abaqus_fea.html' | ||
| description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit | ||
| dynamics FEA.""" | ||
|
|
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| toolchain = SYSTEM | ||
|
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| sources = [ | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-5.tar', | ||
| # hotfixes | ||
| '%%(version)s.FP.CFA.%s.Part_SIMULIA_EstPrd.Linux64.tar' % local_hotfix, | ||
| '%%(version)s.FP.CFA.%s.Part_SIMULIA_FlexNet.Linux64.tar' % local_hotfix, | ||
| '%%(version)s.FP.CFA.%s.Part_SIMULIA_Readme.AllOS.tar' % local_hotfix, | ||
| ] | ||
| checksums = [ | ||
| '9025c9bc2d0345c13d96e88c1c422b1979a14bf7ba281bd32dfe093c1446945d', # 2022.AM_SIM_Abaqus_Extend.AllOS.1-5.tar | ||
| '14c23b3fdfddb723d84a02eb27edc25162e1d27e8fdce053193f72d28ff0a12c', # 2022.AM_SIM_Abaqus_Extend.AllOS.2-5.tar | ||
| '561d54d688ea2f2dcf329701e20502642aecf5526eb56db3a586cbcadfbf20fb', # 2022.AM_SIM_Abaqus_Extend.AllOS.3-5.tar | ||
| 'c085066ae2df68c9c61ea345808042ddb205c642d649f1ec3b7db4aaffb3d544', # 2022.AM_SIM_Abaqus_Extend.AllOS.4-5.tar | ||
| 'bfbc2c1a402881308f68f054e1e376fe153053b4287018ddbc80e76710f6969f', # 2022.AM_SIM_Abaqus_Extend.AllOS.5-5.tar | ||
| # 2022.FP.CFA.2214.Part_SIMULIA_EstPrd.Linux64.tar | ||
| 'da954ac2e24e8e19a527a67d9436ecec4d67cb655cd84b302a15db2b082918c3', | ||
| # 2022.FP.CFA.2214.Part_SIMULIA_FlexNet.Linux64.tar | ||
| '2d135459211754c7004c8142da7aae5ee2b94d578ef5bb9472de7532a9db0614', | ||
| # 2022.FP.CFA.2214.Part_SIMULIA_Readme.AllOS.tar | ||
| '88b5c0b182e2dc3e09c14f89be338993cf7edcfeb2f388f405022c63f5512029', | ||
| ] | ||
|
|
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| dependencies = [('Java', '11')] | ||
|
|
||
| moduleclass = 'cae' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,27 @@ | ||
| name = 'ABAQUS' | ||
| version = '2022' | ||
|
|
||
| homepage = 'https://www.simulia.com/products/abaqus_fea.html' | ||
| description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit | ||
| dynamics FEA.""" | ||
|
|
||
| toolchain = SYSTEM | ||
|
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||
| sources = [ | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-5.tar', | ||
| ] | ||
| checksums = [ | ||
| '9025c9bc2d0345c13d96e88c1c422b1979a14bf7ba281bd32dfe093c1446945d', # 2022.AM_SIM_Abaqus_Extend.AllOS.1-5.tar | ||
| '14c23b3fdfddb723d84a02eb27edc25162e1d27e8fdce053193f72d28ff0a12c', # 2022.AM_SIM_Abaqus_Extend.AllOS.2-5.tar | ||
| '561d54d688ea2f2dcf329701e20502642aecf5526eb56db3a586cbcadfbf20fb', # 2022.AM_SIM_Abaqus_Extend.AllOS.3-5.tar | ||
| 'c085066ae2df68c9c61ea345808042ddb205c642d649f1ec3b7db4aaffb3d544', # 2022.AM_SIM_Abaqus_Extend.AllOS.4-5.tar | ||
| 'bfbc2c1a402881308f68f054e1e376fe153053b4287018ddbc80e76710f6969f', # 2022.AM_SIM_Abaqus_Extend.AllOS.5-5.tar | ||
| ] | ||
|
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||
| dependencies = [('Java', '11')] | ||
|
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||
| moduleclass = 'cae' |
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|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| ## | ||
| # Author: Robert Mijakovic <robert.mijakovic@lxp.lu> | ||
| ## | ||
| easyblock = 'Binary' | ||
|
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| name = 'AMD-uProf' | ||
| version = '3.5.671' | ||
|
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| homepage = 'https://developer.amd.com/amd-uprof/' | ||
| description = """AMD uProf is a performance analysis tool for applications running on Windows, Linux & FreeBSD | ||
| operating systems. It allows developers to better understand the runtime performance of their application and | ||
| to identify ways to improve its performance.""" | ||
|
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| toolchain = SYSTEM | ||
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| source_urls = ['https://developer.amd.com/wordpress/media/files/'] | ||
| sources = ['AMDuProf_Linux_x64_%(version)s.tar.bz2'] | ||
| checksums = ['a73066305228658a14af5ecd6cf45a1aa47ae94f7e9d14db31f43013d3ef1a43'] | ||
|
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| extract_sources = True | ||
|
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| sanity_check_paths = { | ||
| 'files': ['include/AMDTPowerProfileApi.h', 'lib/x64/libAMDProfileController.a', | ||
| 'bin/libAMDThreadProfileAPI.%s' % SHLIB_EXT, 'bin/AMDuProf'], | ||
| 'dirs': ['Examples'] | ||
| } | ||
|
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| sanity_check_commands = ['AMDuProfCLI info --system'] | ||
|
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| modextrapaths = { | ||
| 'LD_LIBRARY_PATH': 'bin' | ||
| } | ||
|
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| moduleclass = 'perf' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,55 @@ | ||
| easyblock = 'PythonBundle' | ||
|
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| name = 'AMPtk' | ||
| version = '1.5.4' | ||
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| homepage = 'https://amptk.readthedocs.io' | ||
| description = """AMPtk is a series of scripts to process NGS amplicon data using USEARCH and VSEARCH, it can also be | ||
| used to process any NGS amplicon data and includes databases setup for analysis of fungal ITS, fungal LSU, bacterial | ||
| 16S, and insect COI amplicons.""" | ||
|
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| toolchain = {'name': 'foss', 'version': '2021b'} | ||
|
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| dependencies = [ | ||
| ('Python', '3.9.6'), | ||
| ('SciPy-bundle', '2021.10'), | ||
| ('matplotlib', '3.4.3'), | ||
| ('h5py', '3.6.0'), | ||
| ('biom-format', '2.1.12'), | ||
| ('Seaborn', '0.11.2'), | ||
| ('Biopython', '1.79'), | ||
| ('edlib', '1.3.9'), | ||
| ] | ||
|
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| use_pip = True | ||
|
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| exts_list = [ | ||
| ('distro', '1.7.0', { | ||
| 'checksums': ['151aeccf60c216402932b52e40ee477a939f8d58898927378a02abbe852c1c39'], | ||
| }), | ||
| ('natsort', '8.1.0', { | ||
| 'checksums': ['c7c1f3f27c375719a4dfcab353909fe39f26c2032a062a8c80cc844eaaca0445'], | ||
| }), | ||
| ('pyfastx', '0.8.4', { | ||
| 'checksums': ['20cee9faff140f973c59fbe98121eac2d67acf3eb7fef5fdf69a8b4942b4468c'], | ||
| }), | ||
| ('amptk', version, { | ||
| 'checksums': ['f6ddedccb56f39624bd825c504f15823c4ff1d5d0539ebe746405696c77ce69d'], | ||
| }), | ||
| ] | ||
|
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| fix_python_shebang_for = ['bin/amptk', 'bin/*.py'] | ||
|
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| sanity_pip_check = True | ||
|
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| sanity_check_paths = { | ||
| 'files': ['bin/amptk', 'bin/amptk_synthetic_mock.py'], | ||
| 'dirs': ['lib/python%(pyshortver)s/site-packages'], | ||
| } | ||
|
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| sanity_check_commands = [ | ||
| "amptk | grep '^Usage:'", | ||
| "amptk_synthetic_mock.py --help", | ||
| ] | ||
|
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| moduleclass = 'bio' |
40 changes: 40 additions & 0 deletions
40
easybuild/easyconfigs/a/ARGoS/ARGoS-3.0.0-beta59-GCC-11.2.0.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,40 @@ | ||
| easyblock = 'CMakeMake' | ||
|
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| name = 'ARGoS' | ||
| version = '3.0.0-beta59' | ||
|
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| homepage = 'http://www.argos-sim.info' | ||
| description = """A parallel, multi-engine simulator for heterogeneous swarm robotics""" | ||
|
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| toolchain = {'name': 'GCC', 'version': '11.2.0'} | ||
|
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| source_urls = ['https://github.com/ilpincy/argos3/archive'] | ||
| sources = ['%(version)s.tar.gz'] | ||
| checksums = ['99007ef5eb10bbe4b8f88dcf0600c62c4cc0a5844e85ec0a3c3499b4637ee8b5'] | ||
|
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| builddependencies = [('CMake', '3.21.1')] | ||
|
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| dependencies = [ | ||
| ('Lua', '5.4.3'), | ||
| ('FreeImage', '3.18.0'), | ||
| ('Qt5', '5.15.2'), | ||
| ('freeglut', '3.2.1'), | ||
| ('motif', '2.3.8'), | ||
| ] | ||
|
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| start_dir = 'src' | ||
|
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| # documentation requires Doxygen, Graphviz, asciidoc | ||
| configopts = '-DARGOS_DOCUMENTATION=OFF -DARGOS_INSTALL_LDSOCONF=OFF -DARGOS_BUILD_NATIVE=ON' | ||
|
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| sanity_check_paths = { | ||
| 'files': ['include/argos3/core/config.h', 'lib/argos3/libargos3core_simulator.%s' % SHLIB_EXT], | ||
| 'dirs': ['share/argos3'] | ||
| } | ||
|
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| sanity_check_commands = ["argos3 --help", "argos3 --version"] | ||
|
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| # ARGoS libaries reside in the argos3 subdirectory | ||
| modextrapaths = {'LD_LIBRARY_PATH': 'lib/argos3'} | ||
|
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| moduleclass = 'phys' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,39 @@ | ||
| easyblock = 'MesonNinja' | ||
|
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| name = 'ATK' | ||
| version = '2.38.0' | ||
|
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| homepage = 'https://developer.gnome.org/atk/' | ||
| description = """ | ||
| ATK provides the set of accessibility interfaces that are implemented by other | ||
| toolkits and applications. Using the ATK interfaces, accessibility tools have | ||
| full access to view and control running applications. | ||
| """ | ||
|
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| toolchain = {'name': 'GCCcore', 'version': '11.3.0'} | ||
|
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| source_urls = [FTPGNOME_SOURCE] | ||
| sources = [SOURCELOWER_TAR_XZ] | ||
| checksums = ['ac4de2a4ef4bd5665052952fe169657e65e895c5057dffb3c2a810f6191a0c36'] | ||
|
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| builddependencies = [ | ||
| ('binutils', '2.38'), | ||
| ('Meson', '0.62.1'), | ||
| ('Ninja', '1.10.2'), | ||
| ('pkgconf', '1.8.0'), | ||
| ('GObject-Introspection', '1.72.0'), | ||
| ] | ||
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| dependencies = [ | ||
| ('GLib', '2.72.1'), | ||
| ] | ||
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| configopts = "--buildtype=release --default-library=both " | ||
| configopts += "-Dintrospection=true " | ||
|
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| sanity_check_paths = { | ||
| 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], | ||
| 'dirs': [], | ||
| } | ||
|
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| moduleclass = 'vis' |
36 changes: 36 additions & 0 deletions
36
easybuild/easyconfigs/a/Albumentations/Albumentations-1.1.0-foss-2021b.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,36 @@ | ||
| easyblock = 'PythonBundle' | ||
|
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| name = 'Albumentations' | ||
| version = '1.1.0' | ||
|
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| homepage = 'https://albumentations.ai' | ||
| description = "Albumentations is a Python library for fast and flexible image augmentations" | ||
|
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| toolchain = {'name': 'foss', 'version': '2021b'} | ||
|
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| dependencies = [ | ||
| ('Python', '3.9.6'), | ||
| ('SciPy-bundle', '2021.10'), | ||
| ('PyYAML', '5.4.1'), | ||
| ('scikit-image', '0.19.1'), | ||
| ('scikit-learn', '1.0.1'), | ||
| ('OpenCV', '4.5.5', '-contrib'), | ||
| ('imgaug', '0.4.0'), | ||
| ] | ||
|
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| preinstallopts = "sed -i 's|CHOOSE_INSTALL_REQUIRES),|[]),|g' setup.py && " | ||
|
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| use_pip = True | ||
|
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| exts_list = [ | ||
| ('qudida', '0.0.4', { | ||
| 'checksums': ['db198e2887ab0c9aa0023e565afbff41dfb76b361f85fd5e13f780d75ba18cc8'], | ||
| }), | ||
| ('albumentations', version, { | ||
| 'checksums': ['60b067b3093908bcc52adb2aa5d44f57ebdbb8ab57a47b0b42f3dc1d3b1ce824'], | ||
| }), | ||
| ] | ||
|
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| sanity_pip_check = True | ||
|
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| moduleclass = 'vis' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| # author: Jillian Rowe <jillian.e.rowe@gmail.com> | ||
| # config upgrade to v5.1.0 by Adam Huffman <adam.huffman@bdi.ox.ac.uk> | ||
| # config upgrade to v5.0.1, v5.3.0, 2018.12, 2019.07, | ||
| # 2019.10, 2020.2, 2020.11, 2022.05 by J. Hein <joachim.hein@lunarc.lu.se> | ||
| # config upgrade to 2019.03 by Davide Vanzo <davide.vanzo@vanderbilt.edu> | ||
| easyblock = 'EB_Anaconda' | ||
|
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| name = 'Anaconda3' | ||
| version = '2022.05' | ||
|
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| homepage = 'https://www.anaconda.com' | ||
| description = """Built to complement the rich, open source Python community, | ||
| the Anaconda platform provides an enterprise-ready data analytics platform | ||
| that empowers companies to adopt a modern open data science analytics architecture. | ||
| """ | ||
|
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| toolchain = SYSTEM | ||
|
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| source_urls = ['https://repo.anaconda.com/archive/'] | ||
| sources = ['%(name)s-%(version)s-Linux-%(arch)s.sh'] | ||
|
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| checksums = [ | ||
| { | ||
| '%(name)s-%(version)s-Linux-x86_64.sh': 'a7c0afe862f6ea19a596801fc138bde0463abcbce1b753e8d5c474b506a2db2d', | ||
| '%(name)s-%(version)s-Linux-ppc64le.sh': 'a50bf5bd26b5c5a2c24028c1aff6da2fa4d4586ca43ae3acdf7ffb9b50d7f282', | ||
| } | ||
| ] | ||
|
|
||
| moduleclass = 'lang' |
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