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{bio}[foss/2020a-rc3] GROMACS v2020.1 (WIP, pending Python binding tests) #10003

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akesandgren
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(created using eb --new-pr)

@akesandgren akesandgren added this to the 2020a milestone Mar 6, 2020
@akesandgren akesandgren added the 2020a before 2020a is released label Mar 6, 2020
@ocaisa
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ocaisa commented Mar 6, 2020

@akesandgren GROMACS now has the Python bindings gmxapi (see http://manual.gromacs.org/current/gmxapi/userguide/install.html#install-from-source for installation from GROMACS source tree), should we start including those too?

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Ah yes, I've been ignoring these for as long as I can...
Should clearly look at those now, i'll mark this WIP...

@akesandgren akesandgren changed the title {bio}[foss/2020a-rc3] GROMACS v2020.1 {bio}[foss/2020a-rc3] GROMACS v2020.1 (WIP, pending Python binding tests) Mar 6, 2020
@zao
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zao commented Mar 6, 2020

Test report by @zao
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
freja - Linux ubuntu 18.04, Intel(R) Core(TM) i7-8700K CPU @ 3.70GHz, Python 2.7.17
See https://gist.github.com/25a3b6962b7dede73cf31a0fd9257da3 for a full test report.

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Test report by @akesandgren
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
b-an03.hpc2n.umu.se - Linux ubuntu 16.04, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 2.7.12
See https://gist.github.com/15480c0affe52f12f7888fb705f80c6d for a full test report.

@akesandgren
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@ocaisa To enable gmxapi we need to turn on -DBUILD_SHARED_LIBS=ON
we currently do -DGMX_PREFER_STATIC_LIBS=ON

Any thoughts on that?
I would prefer to use shared libs for other reasons, like being able to add VMD as a plugin.

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ocaisa commented Mar 9, 2020

No, no thoughts, I'm no expert on GROMACS at all, it was just that the new bindings caught my eye in the last release.

@akesandgren
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I have this sorted in the upcoming easyblock (hopefully)

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akesandgren commented Mar 9, 2020

Replaced with #10026

@akesandgren akesandgren closed this Mar 9, 2020
@akesandgren akesandgren deleted the 20200306135001_new_pr_GROMACS20201 branch March 9, 2020 15:07
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3 participants