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[foss/2020a] add extensions to R 4.0.0 and Bioconductor 3.11 easyconfigs #10621

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May 13, 2020
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[foss/2020a] add extensions to R 4.0.0 and Bioconductor 3.11 easyconfigs #10621

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17 changes: 16 additions & 1 deletion ...uild/easyconfigs/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.11-foss-2020a-R-4.0.0.eb
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ exts_filter = ("R -q --no-save", "%s { %s }" % (local_ext_version_check, local_s

# CRAN packages on which these Bioconductor packages depend are available in R module on which this depends
# !! order of packages is important !!
# packages updated on May 7th 2020
# packages updated on May 11th 2020
exts_list = [
('readr', '1.3.1', {
'checksums': ['33f94de39bb7f2a342fbb2bd4e5afcfec08798eac39672ee18042ac0b349e4f3'],
Expand Down Expand Up @@ -766,6 +766,21 @@ exts_list = [
('muscat', '1.2.0', {
'checksums': ['83c4a88e1cd87fcbe5395655fe02a07f9d00f211a46d547b11543d993436e1f7'],
}),
('IlluminaHumanMethylation450kmanifest', '0.4.0', {
'checksums': ['41b2e54bac3feafc7646fe40bce3aa2b92c10871b0a13657c5736517792fa763'],
}),
('IlluminaHumanMethylationEPICmanifest', '0.3.0', {
'checksums': ['e39a69d98486cec981e97c56f45bbe47d2ccb5bbb66a1b16fa0685575493902a'],
}),
('IlluminaHumanMethylation450kanno.ilmn12.hg19', '0.6.0', {
'checksums': ['249b8fd62add3c95b5047b597cff0868d26a98862a47cebd656edcd175a73b15'],
}),
('IlluminaHumanMethylationEPICanno.ilm10b2.hg19', '0.6.0', {
'checksums': ['4decdbc78a6a8d02bf8aecb0d6e1d81134ae9dbc2375add52574f07829e8cd69'],
}),
('conumee', '1.22.0', {
'checksums': ['cdbbf1ee7e87422b21e2d938559c1b30ce81cc4ccf0bbd9f06a74f5cb162f972'],
}),
]

modextrapaths = {'R_LIBS': ''}
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20 changes: 19 additions & 1 deletion easybuild/easyconfigs/r/R/R-4.0.0-foss-2020a.eb
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Expand Up @@ -70,7 +70,7 @@ exts_default_options = {
}

# !! order of packages is important !!
# packages updated on 29 April 2020
# packages updated on 11 May 2020
exts_list = [
'base',
'datasets',
Expand Down Expand Up @@ -2406,6 +2406,24 @@ exts_list = [
('ggnetwork', '0.5.8', {
'checksums': ['a8c7c19a2bafce898c95d0b2401ef052925db57b85058c7203f0122b3af7bbbd'],
}),
('rstantools', '2.0.0', {
'checksums': ['4ae78aa39c3d4897f453e621a09961d6f2cda27a1b5657d4d4b32d3d89bd80c6'],
}),
('bayesplot', '1.7.1', {
'checksums': ['820ca9ca3258fc68333e75fd60898c0d0f08f513b66c161ca6159a54ad54006b'],
}),
('dygraphs', '1.1.1.6', {
'checksums': ['c3d331f30012e721a048e04639f60ea738cd7e54e4f930ac9849b95f0f005208'],
}),
('rsconnect', '0.8.16', {
'checksums': ['3f728c6a5153dca28f69b9355ae9d18c5f7e70d12495c0c047eef673c1053116'],
}),
('shinystan', '2.5.0', {
'checksums': ['45f9c552a31035c5de8658bb9e5d72da7ec1f88fbddb520d15fe701c677154a1'],
}),
('brms', '2.12.0', {
'checksums': ['fa21505dca65d027f1cf1c573258de5f3c51ca8b94abd6dcf9123a3a27a72999'],
}),
]

moduleclass = 'lang'