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{bio}[GCCcore-10.3.0] minimap2 bumped to 2.20 #13481

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49 changes: 49 additions & 0 deletions easybuild/easyconfigs/m/minimap2/minimap2-2.20-GCCcore-10.3.0.eb
Original file line number Diff line number Diff line change
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# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
# Adam Huffman
# Big Data Institute, University of Oxford
# Updated to 2.20
# J. Sassmannshausen / GSTT

easyblock = 'MakeCp'

name = 'minimap2'
version = '2.20'

homepage = 'https://github.com/lh3/minimap2'
description = """Minimap2 is a fast sequence mapping and alignment
program that can find overlaps between long noisy reads, or map long
reads or their assemblies to a reference genome optionally with detailed
alignment (i.e. CIGAR). At present, it works efficiently with query
sequences from a few kilobases to ~100 megabases in length at an error
rate ~15%. Minimap2 outputs in the PAF or the SAM format. On limited
test data sets, minimap2 is over 20 times faster than most other
long-read aligners. It will replace BWA-MEM for long reads and contig
alignment."""

toolchain = {'name': 'GCCcore', 'version': '10.3.0'}

source_urls = ['https://github.com/lh3/%(name)s/releases/download/v%(version)s/']
sources = ['%(name)s-%(version)s.tar.bz2']
checksums = ['f9eff90a7f14f999df93dff6ed4e3428277edbbd6bda6bdb1800e8d57c9135e3']

builddependencies = [('binutils', '2.36.1')]

files_to_copy = [
(['%(name)s'], 'bin'),
(['lib%(name)s.a'], 'lib'),
(['*.h'], 'include'),
'LICENSE.txt', 'NEWS.md', 'README.md',
(['%(name)s.1'], 'share/man/man1')
]

sanity_check_paths = {
'files': ['bin/%(name)s', 'lib/lib%(name)s.a'],
'dirs': ['include']
}

sanity_check_commands = [
"minimap2 --help",
"cd %(builddir)s/minimap2-%(version)s && minimap2 -a test/MT-human.fa test/MT-orang.fa > test.sam",
]

moduleclass = 'bio'