{data}[GCCcore/10.3.0] Stata v17

[MaximeMoge]

(created using eb --new-pr)

[MaximeMoge]

Test report by @MaximeMoge
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
int1.bullx - Linux RHEL 7.9, x86_64, Intel(R) Xeon(R) CPU E5-2690 0 @ 2.90GHz, Python 2.7.5
See https://gist.github.com/41df906cbe509135a417de9fa999f0f7 for a full test report.

[MaximeMoge]

Test report by @MaximeMoge
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
int1.bullx - Linux RHEL 7.9, x86_64, Intel(R) Xeon(R) CPU E5-2690 0 @ 2.90GHz, Python 2.7.5
See https://gist.github.com/189496b3d804fc7922e2cb914950dba4 for a full test report.

[boegelbot]

@MaximeMoge: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/1338306290
Output from first failing test suite run:

======================================================================
FAIL: test__parse_easyconfig_Stata-17-GCCcore-10.3.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
Test for easyconfig Stata-17-GCCcore-10.3.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 1355, in innertest
    template_easyconfig_test(self, spec_path)
  File "test/easyconfigs/easyconfigs.py", line 1193, in template_easyconfig_test
    "binutils or GCC is a build dep in %s: %s" % (spec, dep_names))
AssertionError: binutils or GCC is a build dep in /home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/s/Stata/Stata-17-GCCcore-10.3.0.eb: ['libpng', 'ncurses']

----------------------------------------------------------------------
Ran 13428 tests in 525.154s

FAILED (failures=1)
(skipped conflicts test)
(skipped dep graph test)
Merge base for develop and HEAD: d032b1b07f11ba1762cca2548a8c9f6793be00f5
Merge base for develop and HEAD: d032b1b07f11ba1762cca2548a8c9f6793be00f5

List of added easyconfig files in this PR:
	Stata-17-GCCcore-10.3.0.eb
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[boegel]

@MaximeMoge Why not use the SYSTEM toolchain here, since this is a binary installation?

[MaximeMoge]

because of the dependency on libpng/1.6.37-GCCcore-10.3.0

[MaximeMoge]

Following @boegel 's comment I tried to use that easyconfig on another machine and it failed.
Turns out I was just lucky and I had all the required deps installed in the OS libraries on the machine I originally used. It looks like ncurses/6.2 and libpng/1.6.37 and not actually required, the stata binaries require ncurses.so.5 and libpng15.so.15

Let's put that PR on hold for now (or even reject it) while I figure this out.

[MaximeMoge]

I just updated the PR:

• the Stata 17 binary depends on ncurses 5. libncurses.so.5 and libtinfo.so.5 are required.
• In ncurses, tinfo is not installed in a separate lib libtinfo.so.5 by default. The configure option --with-termlib should be used to install tinfo in a separate lib. Another option is to use soft links as is done in the ncurses-6.X easyconfigs (see Statically link ncurses... #3545). I chose the latter, and updated the existing ncurses-5.9.eb easyconfig.

[boegelbot]

@MaximeMoge: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/1368072255
Output from first failing test suite run:

======================================================================
(skipped conflicts test)
FAIL: test__parse_easyconfig_Stata-17-GCCcore-10.3.0.eb (test.easyconfigs.easyconfigs.EasyConfigTest)
(skipped dep graph test)
Test for easyconfig Stata-17-GCCcore-10.3.0.eb
Merge base for develop and HEAD: f74f370f068669140cf70c2575731bfe4cd85d1c
----------------------------------------------------------------------
Merge base for develop and HEAD: f74f370f068669140cf70c2575731bfe4cd85d1c
Traceback (most recent call last):

  File "test/easyconfigs/easyconfigs.py", line 1368, in innertest
List of changed easyconfig files in this PR:
    template_easyconfig_test(self, spec_path)
	ncurses-5.9.eb
  File "test/easyconfigs/easyconfigs.py", line 1206, in template_easyconfig_test

    "binutils or GCC is a build dep in %s: %s" % (spec, dep_names))
List of added easyconfig files in this PR:
AssertionError: binutils or GCC is a build dep in /home/runner/work/easybuild-easyconfigs/easybuild-easyconfigs/easybuild/easyconfigs/s/Stata/Stata-17-GCCcore-10.3.0.eb: ['libpng', 'ncurses']
	Stata-17-GCCcore-10.3.0.eb

======================================================================
FAIL: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 783, in test_dep_versions_per_toolchain_generation
    self.assertFalse(multi_dep_vars, error_msg)
AssertionError: No multi-variant deps found for '^.*-(?P<tc_gen>GCCcore-([7-9]|[1-9][0-9])\.[0-9]).*\.eb$' easyconfigs:

found 2 variants of 'ncurses' dependency in easyconfigs using 'GCCcore-10.3' toolchain generation
* version: 5.9; versionsuffix:  as dep for set(['Stata-17-GCCcore-10.3.0.eb'])
* version: 6.2; versionsuffix:  as dep for set(['nvtop-1.2.1-GCCcore-10.3.0.eb', 'cairo-1.16.0-GCCcore-10.3.0.eb', 'util-linux-2.36-GCCcore-10.3.0.eb', 'protobuf-python-3.17.3-GCCcore-10.3.0.eb', 'longestrunsubsequence-1.0.1-GCCcore-10.3.0.eb', 'at-spi2-atk-2.38.0-GCCcore-10.3.0.eb', 'aria2-1.35.0-GCCcore-10.3.0.eb', 'bpytop-1.0.67-GCCcore-10.3.0.eb', 'GObject-Introspection-1.68.0-GCCcore-10.3.0.eb', 'BioPerl-1.7.8-GCCcore-10.3.0.eb', 'libglvnd-1.3.3-GCCcore-10.3.0.eb', 'intltool-0.51.0-GCCcore-10.3.0.eb', 'Python-2.7.18-GCCcore-10.3.0-bare.eb', 'ack-3.5.0-GCCcore-10.3.0.eb', 'Archive-Zip-1.68-GCCcore-10.3.0.eb', 'GLFW-3.3.4-GCCcore-10.3.0.eb', 'LAME-3.100-GCCcore-10.3.0.eb', 'Graphviz-2.47.2-GCCcore-10.3.0.eb', 'libepoxy-1.5.8-GCCcore-10.3.0.eb', 'JupyterLab-3.0.16-GCCcore-10.3.0.eb', 'APR-util-1.6.1-GCCcore-10.3.0.eb', 'GD-2.73-GCCcore-10.3.0.eb', 'git-2.32.0-GCCcore-10.3.0-nodocs.eb', 'glew-2.1.0-GCCcore-10.3.0.eb', 'tmux-3.2a-GCCcore-10.3.0.eb', 'Pillow-SIMD-8.2.0-GCCcore-10.3.0.eb', 'phototonic-2.1-GCCcore-10.3.0.eb', 'kim-api-2.2.1-GCCcore-10.3.0.eb', 'SDL2-2.0.14-GCCcore-10.3.0.eb', 'SCons-4.1.0.post1-GCCcore-10.3.0.eb', 'Python-3.9.5-GCCcore-10.3.0-bare.eb', 'Ghostscript-9.54.0-GCCcore-10.3.0.eb', 'GTK3-3.24.29-GCCcore-10.3.0.eb', 'FreeTDS-1.3.3-GCCcore-10.3.0.eb', 'PostgreSQL-13.3-GCCcore-10.3.0.eb', 'JupyterHub-1.4.1-GCCcore-10.3.0.eb', 'libdrm-2.4.106-GCCcore-10.3.0.eb', 'Qt5-5.15.2-GCCcore-10.3.0.eb', 'gnuplot-5.4.2-GCCcore-10.3.0.eb', 'cutadapt-3.4-GCCcore-10.3.0.eb', 'bashplotlib-0.6.5-GCCcore-10.3.0.eb', 'PyQt5-5.15.4-GCCcore-10.3.0.eb', 'pyproj-3.1.0-GCCcore-10.3.0.eb', 'Mesa-21.1.1-GCCcore-10.3.0.eb', 'glib-networking-2.68.1-GCCcore-10.3.0.eb', 'Tk-8.6.11-GCCcore-10.3.0.eb', 'DB_File-1.856-GCCcore-10.3.0.eb', 'Python-3.9.5-GCCcore-10.3.0.eb', 'Mercurial-5.8-GCCcore-10.3.0.eb', 'CubeGUI-4.6-GCCcore-10.3.0.eb', 'pkgconfig-1.5.4-GCCcore-10.3.0-python.eb', 'gexiv2-0.12.2-GCCcore-10.3.0.eb', 'LLVM-12.0.1-GCCcore-10.3.0.eb', 'freeglut-3.2.1-GCCcore-10.3.0.eb', 'Clang-12.0.1-GCCcore-10.3.0.eb', 'JSON-GLib-1.6.2-GCCcore-10.3.0.eb', 'canu-2.2-GCCcore-10.3.0.eb', 'Mako-1.1.4-GCCcore-10.3.0.eb', 'Vala-0.52.4-GCCcore-10.3.0.eb', 'GL2PS-1.4.2-GCCcore-10.3.0.eb', 'X11-20210518-GCCcore-10.3.0.eb', 'AOCC-3.1.0-GCCcore-10.3.0.eb', 'YACS-0.1.8-GCCcore-10.3.0.eb', 'dill-0.3.4-GCCcore-10.3.0.eb', 'babl-0.1.86-GCCcore-10.3.0.eb', 'at-spi2-core-2.40.2-GCCcore-10.3.0.eb', 'tqdm-4.61.1-GCCcore-10.3.0.eb', 'tqdm-4.61.2-GCCcore-10.3.0.eb', 'Perl-5.32.1-GCCcore-10.3.0.eb', 'parallel-20210622-GCCcore-10.3.0.eb', 'makeinfo-6.7-GCCcore-10.3.0.eb', 'gettext-0.21-GCCcore-10.3.0.eb', 'fontconfig-2.13.93-GCCcore-10.3.0.eb', 'CMake-3.20.1-GCCcore-10.3.0.eb', 'Nim-1.4.8-GCCcore-10.3.0.eb', 'Gdk-Pixbuf-2.42.6-GCCcore-10.3.0.eb', 'xprop-1.2.5-GCCcore-10.3.0.eb', 'PROJ-8.0.1-GCCcore-10.3.0.eb', 'GitPython-3.1.18-GCCcore-10.3.0.eb', 'hypothesis-6.13.1-GCCcore-10.3.0.eb', 'ZeroMQ-4.3.4-GCCcore-10.3.0.eb', 'GDB-10.2-GCCcore-10.3.0.eb', 'ImageMagick-7.0.11-14-GCCcore-10.3.0.eb', 'libgd-2.3.1-GCCcore-10.3.0.eb', 'LLVM-11.1.0-GCCcore-10.3.0.eb', 'libgeotiff-1.6.0-GCCcore-10.3.0.eb', 'GTS-0.7.6-GCCcore-10.3.0.eb', 'pytest-xdist-2.3.0-GCCcore-10.3.0.eb', 'SQLite-3.35.4-GCCcore-10.3.0.eb', 'GLib-2.68.2-GCCcore-10.3.0.eb', 'Pillow-8.2.0-GCCcore-10.3.0.eb', 'XlsxWriter-1.4.4-GCCcore-10.3.0.eb', 'gpustat-0.6.0-GCCcore-10.3.0.eb', 'plotly.py-5.1.0-GCCcore-10.3.0.eb', 'tcsh-6.22.04-GCCcore-10.3.0.eb', 'librsvg-2.51.2-GCCcore-10.3.0.eb', 'Mesa-demos-8.4.0-GCCcore-10.3.0.eb', 'XML-LibXML-2.0207-GCCcore-10.3.0.eb', 'HarfBuzz-2.8.1-GCCcore-10.3.0.eb', 'python-isal-0.11.0-GCCcore-10.3.0.eb', 'flatbuffers-python-2.0-GCCcore-10.3.0.eb', 'GEGL-0.4.30-GCCcore-10.3.0.eb', 'Subversion-1.14.1-GCCcore-10.3.0.eb', 'ATK-2.36.0-GCCcore-10.3.0.eb', 'GTK+-2.24.33-GCCcore-10.3.0.eb', 'XML-Parser-2.46-GCCcore-10.3.0-Perl-5.32.1.eb', 'GTK2-2.24.33-GCCcore-10.3.0.eb', 'cppy-1.1.0-GCCcore-10.3.0.eb', 'libreadline-8.1-GCCcore-10.3.0.eb', 'pybind11-2.6.2-GCCcore-10.3.0.eb', 'archspec-0.1.2-GCCcore-10.3.0.eb', 'Flask-1.1.4-GCCcore-10.3.0.eb', 'typing-extensions-3.10.0.0-GCCcore-10.3.0.eb', 'lxml-4.6.3-GCCcore-10.3.0.eb', 'expecttest-0.1.3-GCCcore-10.3.0.eb', 'Meson-0.58.0-GCCcore-10.3.0.eb', 'Xvfb-1.20.11-GCCcore-10.3.0.eb', 'Gurobi-9.1.2-GCCcore-10.3.0.eb', 'Serf-1.3.9-GCCcore-10.3.0.eb', 'AOCC-3.0.0-GCCcore-10.3.0.eb', 'PyCairo-1.20.1-GCCcore-10.3.0.eb', 'radeontop-1.3-GCCcore-10.3.0.eb', 'libmypaint-1.6.1-GCCcore-10.3.0.eb', 'PyYAML-5.4.1-GCCcore-10.3.0.eb', 'libGLU-9.0.1-GCCcore-10.3.0.eb', 'Tkinter-3.9.5-GCCcore-10.3.0.eb', 'IPython-7.25.0-GCCcore-10.3.0.eb', 'LDC-1.26.0-GCCcore-10.3.0.eb', 'FLTK-1.3.6-GCCcore-10.3.0.eb', 'FFmpeg-4.3.2-GCCcore-10.3.0.eb', 'Lua-5.4.3-GCCcore-10.3.0.eb', 'libdap-3.20.7-GCCcore-10.3.0.eb', 'Pango-1.48.5-GCCcore-10.3.0.eb', 'openpyxl-3.0.7-GCCcore-10.3.0.eb', 'scikit-build-0.11.1-GCCcore-10.3.0.eb'])


----------------------------------------------------------------------
Ran 13497 tests in 539.386s

FAILED (failures=2)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

[lexming]

@MaximeMoge thanks for your contribution, I continued your work here and fixed the issues with this PR:

• as requested by @boegel, Stata should be installed in the SYSTEM toolchain as this is just a binary package
• the dependency on libpng can be solved by adding a new easyconfig for it in SYSTEM as well
• as you found out, Stata depends on an older libpng15.so.15 which is not provided by libpng v1.6, so making a new easyconfig is needed in any case
• moving to SYSTEM also solves the issue with ncurses v5.9, which is not default in GCCcore/10.3.0

I opened a new PR keeping your commits and adding my changes. So I'll close this one as superseded by #15899.