replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs #17412

surak · 2023-02-23T13:08:50Z

(created using eb --new-pr)

These easyconfig files come from "develop" , so there are a couple other changes, apparently, which are not on the current tag.

This is a fix for
#17410

SebastianAchilles · 2023-02-24T08:30:09Z

@boegelbot please test @ jsc-zen2
CORE_CNT=16
EB_ARGS="--installpath /tmp/$USER/pr17412"

boegelbot · 2023-02-24T08:32:08Z

@SebastianAchilles: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17412 EB_ARGS="--installpath /tmp/$USER/pr17412" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17412 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2243

Test results coming soon (I hope)...

- notification for comment with ID 1443123931 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-24T09:22:34Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/cf9d8a83fe593ce70bf594c75e321225 for a full test report.

SebastianAchilles · 2023-02-24T09:36:47Z

@boegelbot please test @ generoso
CORE_CNT=16
EB_ARGS="--installpath /tmp/$USER/pr17412"

boegelbot · 2023-02-24T09:40:09Z

@SebastianAchilles: Request for testing this PR well received on login1

PR test command 'EB_PR=17412 EB_ARGS="--installpath /tmp/$USER/pr17412" EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17412 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10350

Test results coming soon (I hope)...

- notification for comment with ID 1443349632 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

SebastianAchilles · 2023-02-24T10:06:12Z

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
bwd-rockylinux-91 - Linux Rocky Linux 9.1 (Blue Onyx), x86_64, Intel(R) Core(TM) i7-6900K CPU @ 3.20GHz (broadwell), 2 x NVIDIA NVIDIA GeForce GTX 1060 6GB, 525.60.13, Python 3.9.14
See https://gist.github.com/d8d1af9692654248d00668cebdac2a2b for a full test report.

SebastianAchilles · 2023-02-24T10:13:00Z

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
skl-rockylinux-87 - Linux Rocky Linux 8.7, x86_64, Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz (skylake), 1 x NVIDIA NVIDIA RTX A4000, 525.85.12, Python 3.6.8
See https://gist.github.com/07a8626e79b04a3a70057afca9b09dad for a full test report.

SebastianAchilles · 2023-02-24T10:17:11Z

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
skl-opensuse-154 - Linux openSUSE Leap 15.4, x86_64, Intel(R) Core(TM) i7-8700 CPU @ 3.20GHz (skylake), Python 3.6.15
See https://gist.github.com/0fb446e254e40524e98a2b3477a4fc37 for a full test report.

SebastianAchilles · 2023-02-24T10:22:26Z

Test report by @SebastianAchilles
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
zen2-ubuntu-2210 - Linux Ubuntu 22.10 (Kinetic Kudu), x86_64, AMD EPYC 7452 32-Core Processor (zen2), Python 3.10.7
See https://gist.github.com/fd1463ef72c9df3c05714ff4d17ec2b0 for a full test report.

boegelbot · 2023-02-24T10:37:42Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cnx1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz (haswell), Python 3.6.8
See https://gist.github.com/6e7b6f40bfe0923df9e839f7249400af for a full test report.

easybuild/easyconfigs/p/Python/Python-3.10.4-GCCcore-11.3.0.eb

…lled correctly in Python 3.10.x easyconfigs

boegel · 2023-02-25T18:06:12Z

@boegelbot please test @ generoso
EB_ARGS="--skip"

boegelbot · 2023-02-25T18:10:09Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=17412 EB_ARGS="--skip" EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17412 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 10365

Test results coming soon (I hope)...

- notification for comment with ID 1445171814 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-25T18:16:08Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/721dc1cf678dabc0e5584b75e630ac7e for a full test report.

Micket · 2023-02-25T21:11:31Z

@boegelbot please test @ jsc-zen2
EB_ARGS="--skip"

boegelbot · 2023-02-25T21:12:12Z

@Micket: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17412 EB_ARGS="--skip" /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17412 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2266

Test results coming soon (I hope)...

- notification for comment with ID 1445207320 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-02-25T21:16:11Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/6c0b9d9cc21e42f1ae17c9692ee0c1b7 for a full test report.

boegel · 2023-02-25T23:20:56Z

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3121.skitty.os - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.6.8
See https://gist.github.com/5193cd10c54dd40d3470d705d691196a for a full test report.

Micket · 2023-02-25T23:25:45Z

Test report by @Micket
SUCCESS
Build succeeded for 6 out of 6 (2 easyconfigs in total)
vera-c2 - Linux Rocky Linux 8.6, x86_64, Intel Xeon Processor (Skylake), Python 3.6.8
See https://gist.github.com/dbe9ed8bfe4a98c15703620c40284583 for a full test report.

boegel · 2023-02-26T08:20:50Z

Going in, thanks @surak!

and easybuilders/easybuild-easyconfigs#17412

…ce pycrypto was replaced with pycryptodome in easybuilders#17412

smoors · 2023-06-26T16:46:17Z

@boegelbot: please test @ generoso

boegelbot · 2023-06-26T16:50:09Z

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=17412 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_17412 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 11135

Test results coming soon (I hope)...

- notification for comment with ID 1607848985 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-06-26T18:03:36Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/8b14d924da0d04e45c6de1180be45525 for a full test report.

branfosj · 2023-06-26T18:57:45Z

@boegelbot please test @ jsc-zen2

boegelbot · 2023-06-26T19:02:07Z

@branfosj: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=17412 EB_ARGS= /opt/software/slurm/bin/sbatch --mem-per-cpu=4000M --job-name test_PR_17412 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 2891

Test results coming soon (I hope)...

- notification for comment with ID 1608061606 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2023-06-26T20:01:53Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegelbot/9a5f9c5e4b09b39844b8f7789b5801f8 for a full test report.

surak and others added 2 commits February 23, 2023 13:08

Fix for obsolete pycrypto on Python 3.10

bcd559b

add back comments that were removed by inject-checksums

80f7cdb

SebastianAchilles added this to the next release (4.7.1?) milestone Feb 24, 2023

SebastianAchilles added bug fix change labels Feb 24, 2023

SebastianAchilles linked an issue Feb 24, 2023 that may be closed by this pull request

Python 3.10.4 and Python-3.10.8 (and possibly others) come with a broken PyCrypto #17410

Closed

Micket mentioned this pull request Feb 24, 2023

{bio}[foss/2022a] HTSplotter v0.15 w/ Python 3.10.4 #17369

Merged

boegel changed the title ~~Fix for obsolete pycrypto on Python 3.10~~ replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs Feb 25, 2023

boegel requested changes Feb 25, 2023

View reviewed changes

easybuild/easyconfigs/p/Python/Python-3.10.4-GCCcore-11.3.0.eb Outdated Show resolved Hide resolved

use 'import Crypto.PublicKey.RSA' to check that pycryptodome is insta…

545a571

…lled correctly in Python 3.10.x easyconfigs

boegel approved these changes Feb 26, 2023

View reviewed changes

boegel merged commit 483d81f into easybuilders:develop Feb 26, 2023

BerndDoser added a commit to BerndDoser/easybuild-easyconfigs that referenced this pull request Feb 27, 2023

See easybuilders/easybuild-easyconfigs#17410

51b7f85

and easybuilders/easybuild-easyconfigs#17412

boegel added a commit to boegel/easybuild-easyconfigs that referenced this pull request Mar 21, 2023

remove preinstallopts to break import of Crypto, no longer needed sin…

89b7512

…ce pycrypto was replaced with pycryptodome in easybuilders#17412

branfosj mentioned this pull request Jun 28, 2023

oxDNA installs extra python packages in Python installdir #18211

Closed

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replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs #17412

replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs #17412

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replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs #17412

replace obsolete pycrypto with pycryptodome in Python 3.10.x easyconfigs #17412

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