add patch to fix CVE-2024-27322 in R v4.1.x, v4.2.x, v4.3.x

[boegel]

(created using eb --new-pr)

[boegel]

@boegelbot please test @ generoso
EB_ARGS="--installpath /tmp/$USER/pr20462"
CORE_CNT=16

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20462 EB_ARGS="--installpath /tmp/$USER/pr20462" EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20462 --ntasks="16" ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 13389

Test results coming soon (I hope)...

- notification for comment with ID 2091468226 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3147.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/c6194d1273b55c4a13eb813f77cd7de8 for a full test report.

[boegel]

@boegelbot please test @ jsc-zen3
EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install"
CORE_CNT=16

[boegelbot]

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20462 EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20462 --ntasks="16" ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 4059

Test results coming soon (I hope)...

- notification for comment with ID 2092624020 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/76053f52179dc1646c48af0186af55ee for a full test report.

edit (by @boegel) failure for R-4.1.0-foss-2021a.eb can be neglected, since this is on Rocky Linux 9.3

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3138.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/b84de7f3059dcf42b41e358450dc159a for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3138.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/7868e8d542ca8f78fd86b8486cb2b659 for a full test report.

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 6 out of 7 (7 easyconfigs in total)
cnx2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2b398b32e2856dc4f65e374df67c0fd6 for a full test report.

[boegel]

@boegelbot please test @ generoso
EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install R-4.3.2-gfbf-2023a.eb"

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20462 EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install R-4.3.2-gfbf-2023a.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20462 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 13403

Test results coming soon (I hope)...

- notification for comment with ID 2094685145 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/92d50387818e95e9724c2a835b3d384b for a full test report.

edit (by @boegel): this failed because there was stuff installed in the bot's home dir, I've manually removed /home/boegelbot/R/x86_64-pc-linux-gnu-library/4.3/

[boegelbot@cns1 ~]$ ls -lrt /home/boegelbot/R/x86_64-pc-linux-gnu-library/4.3/
total 28K
drwxrwxr-x. 11 boegelbot boegelbot 4.0K Mar 13 12:59 renv
drwxrwxr-x. 11 boegelbot boegelbot 4.0K Mar 13 12:59 digest
drwxrwxr-x.  8 boegelbot boegelbot 4.0K Mar 13 12:59 purrr
drwxrwxr-x.  8 boegelbot boegelbot 4.0K Mar 13 12:59 yaml
drwxrwxr-x. 10 boegelbot boegelbot 4.0K Mar 13 12:59 rmarkdown
drwxrwxr-x. 11 boegelbot boegelbot 4.0K Mar 13 13:00 testthat
drwxrwxr-x. 10 boegelbot boegelbot 4.0K Mar 13 13:00 xml2

[boegel]

@boegelbot please test @ generoso
EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install R-4.3.2-gfbf-2023a.eb"

[boegelbot]

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20462 EB_ARGS="--installpath /tmp/$USER/pr20462 --experimental --parallel-extensions-install R-4.3.2-gfbf-2023a.eb" EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20462 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 13406

Test results coming soon (I hope)...

- notification for comment with ID 2095304162 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/14b144a6bc05645837283ed6255971f3 for a full test report.

[akesandgren]

LGTM

[akesandgren]

Going in, thanks @boegel!