{lang} [foss/2016b] MXNet/0.9.3 (REVIEW)

easybuild/easyconfigs/a/ATK/ATK-2.24.0-intel-2017a.eb

@@ -0,0 +1,34 @@
+easyblock = 'ConfigureMake'
+
+name = 'ATK'
+version = '2.24.0'
+
+homepage = 'https://developer.gnome.org/ATK/stable/'
+description = """
+ ATK provides the set of accessibility interfaces that are implemented by other
+ toolkits and applications. Using the ATK interfaces, accessibility tools have
+ full access to view and control running applications.
+"""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [FTPGNOME_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+
+dependencies = [
+    ('GLib', '2.52.0'),
+    ('GObject-Introspection', '1.52.0')
+]
+
+configopts = "--enable-introspection=yes"
+
+modextrapaths = {
+    'XDG_DATA_DIRS': 'share',
+}
+
+sanity_check_paths = {
+    'files': ['lib/libatk-1.0.%s' % SHLIB_EXT],
+    'dirs': [],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/a/ant/ant-1.10.1-Java-1.8.0_131.eb

@@ -0,0 +1,26 @@
+name = 'ant'
+version = '1.10.1'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'http://ant.apache.org/'
+description = """Apache Ant is a Java library and command-line tool whose mission is to drive processes described in
+ build files as targets and extension points dependent upon each other. The main known usage of Ant is the build of
+ Java applications."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+sources = ['apache-%(name)s-%(version)s-src.tar.gz']
+source_urls = ['http://archive.apache.org/dist/%(name)s/source/']
+
+dependencies = [('Java', '1.8.0_131')]
+
+builddependencies = [('JUnit', '4.12', versionsuffix)]
+
+sanity_check_paths = {
+    'files': ['bin/ant', 'lib/ant.jar', 'lib/ant.jar'],
+    'dirs': [],
+}
+
+modextravars = {'ANT_HOME': '%(installdir)s'}
+
+moduleclass = 'devel'

easybuild/easyconfigs/f/FFmpeg/FFmpeg-3.3-intel-2017a.eb

@@ -0,0 +1,32 @@
+easyblock = 'ConfigureMake'
+
+name = 'FFmpeg'
+version = '3.3'
+
+homepage = 'https://www.ffmpeg.org/'
+description = """A complete, cross-platform solution to record, convert and stream audio and video."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+sources = [SOURCELOWER_TAR_BZ2]
+source_urls = ['http://ffmpeg.org/releases/']
+
+dependencies = [
+    ('NASM', '2.12.02'),
+    ('zlib', '1.2.11'),
+    ('bzip2', '1.0.6'),
+    ('x264', '20170424'),
+    ('X11', '20170314'),
+]
+
+configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" '
+configopts += '--enable-libx264'
+
+sanity_check_paths = {
+    'files': ['bin/ff%s' % x for x in ['mpeg', 'probe', 'server']] +
+             ['lib/lib%s.%s' % (x, y) for x in ['avdevice', 'avfilter', 'avformat', 'avcodec', 'postproc',
+                                                'swresample', 'swscale', 'avutil'] for y in [SHLIB_EXT, 'a']],
+    'dirs': ['include']
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/GTK+/GTK+-2.24.31-intel-2017a.eb

@@ -0,0 +1,24 @@
+easyblock = 'ConfigureMake'
+
+name = 'GTK+'
+version = '2.24.31'
+
+homepage = 'https://www.gtk.org/'
+description = """The GTK+ 2 package contains libraries used for creating graphical user
+interfaces for applications."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [FTPGNOME_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+
+dependencies = [
+    ('ATK', '2.24.0'),
+    ('Gdk-Pixbuf', '2.36.6'),
+    ('Pango', '1.40.5'),
+    ('GObject-Introspection', '1.52.0'),
+]
+
+configopts = "--disable-silent-rules --disable-glibtest --enable-introspection=yes --disable-visibility "
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/GTS/GTS-0.7.6-intel-2017a.eb

@@ -0,0 +1,25 @@
+easyblock = 'ConfigureMake'
+
+name = 'GTS'
+version = '0.7.6'
+
+homepage = 'http://gts.sourceforge.net/'
+description = """GTS stands for the GNU Triangulated Surface Library.
+ It is an Open Source Free Software Library intended to provide a set of useful
+ functions to deal with 3D surfaces meshed with interconnected triangles."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('GLib', '2.52.0'),
+]
+
+sanity_check_paths = {
+    'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'],
+    'dirs': []
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/Gdk-Pixbuf/Gdk-Pixbuf-2.36.6-intel-2017a.eb

@@ -0,0 +1,34 @@
+easyblock = 'ConfigureMake'
+
+name = 'Gdk-Pixbuf'
+version = '2.36.6'
+
+homepage = 'https://developer.gnome.org/gdk-pixbuf/stable/'
+description = """
+ The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation.
+ It is used by GTK+ 2 and GTK+ 3 to load and manipulate images. In the past it
+ was distributed as part of GTK+ 2 but it was split off into a separate package
+ in preparation for the change to GTK+ 3.
+"""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [FTPGNOME_SOURCE]
+sources = [SOURCELOWER_TAR_XZ]
+
+dependencies = [
+    ('GLib', '2.52.0'),
+    ('libjpeg-turbo', '1.5.1'),
+    ('libpng', '1.6.29'),
+    ('LibTIFF', '4.0.7'),
+    ('GObject-Introspection', '1.52.0')
+]
+
+configopts = "--disable-maintainer-mode --enable-debug=no --enable-introspection=yes "
+configopts += "--disable-Bsymbolic --without-gdiplus --enable-shared --enable-static"
+
+modextrapaths = {
+    'XDG_DATA_DIRS': 'share',
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/Graphviz/Graphviz-2.40.1-intel-2017a.eb

@@ -0,0 +1,67 @@
+easyblock = 'ConfigureMake'
+
+name = 'Graphviz'
+version = '2.40.1'
+
+homepage = 'http://www.graphviz.org/'
+description = """Graphviz is open source graph visualization software. Graph visualization
+ is a way of representing structural information as diagrams of
+ abstract graphs and networks. It has important applications in networking,
+ bioinformatics,  software engineering, database and web design, machine learning,
+ and in visual interfaces for other technical domains."""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = ['http://www.graphviz.org/pub/graphviz/stable/SOURCES/']
+sources = [SOURCELOWER_TAR_GZ]
+
+dependencies = [
+    ('cairo', '1.14.8'),
+    ('expat', '2.2.0'),
+    ('freetype', '2.7.1', '-libpng-1.6.29'),
+    ('Ghostscript', '9.21'),
+    ('GTS', '0.7.6'),
+    ('Java', '1.8.0_121', '', True),
+    ('libpng', '1.6.29'),
+    ('Pango', '1.40.5'),
+    ('Perl', '5.24.1'),
+    ('Qt', '4.8.7'),
+    ('Tcl', '8.6.6'),
+    ('zlib', '1.2.11'),
+]
+
+builddependencies = [
+    ('M4', '1.4.18'),
+    ('SWIG', '3.0.12', '-Python-2.7.13'),
+]
+
+patches = [
+    'Graphviz-%(version)s_icc_vmalloc.patch',
+    'Graphviz-2.38.0_icc_sfio.patch',
+]
+
+preconfigopts = "sed -i 's/install-data-hook$//g' tclpkg/Makefile.in && "
+configopts = '--enable-guile=no --enable-lua=no --enable-ocaml=no '
+configopts += '--enable-r=no --enable-ruby=no '
+
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
+sanity_check_paths = {
+    'files': ['bin/cluster', 'bin/dot', 'bin/gvmap',
+              'lib/libcdt.%s' % SHLIB_EXT, 'lib/libgvc.%s' % SHLIB_EXT, 'lib/libxdot.%s' % SHLIB_EXT],
+    'dirs': ['include', 'lib/graphviz']
+}
+
+sanity_check_commands = [
+    ("test ! -d $EBROOTTCL/lib/*/graphviz", ''),
+    ("test ! -d $EBROOTTCL/lib64/*/graphviz", ''),
+]
+
+modextrapaths = {
+    'PYTHONPATH': 'lib/graphviz/python',
+    'CLASSPATH': 'lib/graphviz/java/org/graphviz',
+    'LD_LIBRARY_PATH': 'lib/graphviz/java',
+    'TCLLIBPATH': 'lib/graphviz/tcl',
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/Graphviz/Graphviz-2.40.1_icc_vmalloc.patch

@@ -0,0 +1,16 @@
+# iffe determines wrongly the vmalloc libraries.
+# for icc _lib_mallopt, _lib_mallinfo, and _lib_mstats should be 0 in /FEATURE/vmalloc
+# inspired by http://gnats.netbsd.org/43870
+diff -ur graphviz-2.40.1.orig/lib/vmalloc/features/vmalloc graphviz-2.40.1/lib/vmalloc/features/vmalloc
+--- graphviz-2.40.1.orig/lib/vmalloc/features/vmalloc	2016-12-08 06:43:20.000000000 +0100
++++ graphviz-2.40.1/lib/vmalloc/features/vmalloc	2017-05-24 22:13:14.737811602 +0200
+@@ -11,9 +11,6 @@
+ sys stat
+ typ ssize_t
+ hdr malloc
+-lib mallopt
+-lib mallinfo
+-lib mstats
+ hdr dlfcn
+
+ std	malloc note{ stuck with standard malloc }end noexecute{

easybuild/easyconfigs/g/graphviz/graphviz-0.7.1-intel-2017a-Python-2.7.13.eb

@@ -0,0 +1,25 @@
+easyblock = 'PythonPackage'
+
+name = 'graphviz'
+version = '0.7.1'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://pypi.python.org/pypi/graphviz'
+description = """Simple Python interface for Graphviz"""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+
+source_urls = [PYPI_SOURCE]
+sources = [SOURCE_ZIP]
+
+dependencies = [
+    ('Python', '2.7.13'),
+    ('Graphviz', '2.40.1'),
+]
+
+sanity_check_paths = {
+    'files': [],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/j/JUnit/JUnit-4.12-Java-1.8.0_131.eb

@@ -0,0 +1,22 @@
+easyblock = 'JAR'
+
+name = 'JUnit'
+version = '4.12'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'http://junit.org'
+description = """A programmer-oriented testing framework for Java."""
+
+toolchain = {'name': 'dummy', 'version': ''}
+
+sources = ['%(namelower)s-%(version)s.jar']
+source_urls = ['http://search.maven.org/remotecontent?filepath=junit/junit/%(version)s/']
+
+dependencies = [('Java', '1.8.0_131')]
+
+sanity_check_paths = {
+    'files': sources,
+    'dirs': [],
+}
+
+moduleclass = 'devel'

easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-foss-2016b-Python-2.7.12.eb

@@ -0,0 +1,38 @@
+name = 'MXNet'
+version = '0.9.3'
+versionsuffix = '-Python-%(pyver)s-R-%(rver)s'
+
+homepage = 'http://mxnet.io/'
+description = """Flexible and Efficient Library for Deep Learning"""
+
+toolchain = {'name': 'foss', 'version': '2016b'}
+toolchainopts = {'cstd': 'c++11', 'opt': True, 'pic': True, 'openmp': True}
+
+source_urls = ['https://github.com/dmlc/mxnet/archive']
+
+# MXNet pulls in a bunch of submodules which don't have releases.
+# We download the current HEAD of the repos at the current time (13/03/17)
+sources = [
+    'v%(version)s.tar.gz', # MXNet
+    'https://github.com/dmlc/ps-lite/archive/6856021ca925c7.tar.gz',   # ps-lite
+    'https://github.com/dmlc/mshadow/archive/c29ac58320d7b0.tar.gz',   # mshadow
+    'https://github.com/dmlc/nnvm/archive/0d64855f741e04.tar.gz',      # nnvm
+    'https://github.com/dmlc/dmlc-core/archive/b32ec4aee65a66.tar.gz', # dmlc-core
+]
+
+checksums = [
+    "84971e4a0e2e9db3757623657aa5b9ec",  # v0.9.3.tar.gz
+    "12c96664978c545a7269b93635719b18",  # 6856021ca925c7.tar.gz
+    "3dc48183e123c650707bcf26a9254941",  # c29ac58320d7b0.tar.gz
+    "fb04cb1694f1e66591a31a18bc92b451",  # 0d64855f741e04.tar.gz
+    "da873c881758c0e10ac0928f86568456",  # b32ec4aee65a66.tar.gz
+]
+
+dependencies = [
+    ('Python', '2.7.12'),
+    ('graphviz', '0.5.1', '-Python-%(pyver)s'),
+    ('OpenCV', '3.1.0'),
+    ('R', '3.3.3', '-X11-20160819'),
+]
+
+moduleclass = 'math'

easybuild/easyconfigs/m/MXNet/MXNet-0.9.3-intel-2017a-Python-2.7.13-R-3.4.0.eb

@@ -0,0 +1,38 @@
+name = 'MXNet'
+version = '0.9.3'
+versionsuffix = '-Python-%(pyver)s-R-%(rver)s'
+
+homepage = 'http://mxnet.io/'
+description = """Flexible and Efficient Library for Deep Learning"""
+
+toolchain = {'name': 'intel', 'version': '2017a'}
+toolchainopts = {'cstd': 'c++11', 'opt': True, 'pic': True, 'openmp': True}
+
+source_urls = ['https://github.com/dmlc/mxnet/archive']
+
+# MXNet pulls in a bunch of submodules which don't have releases.
+# We download the current HEAD of the repos at the current time (13/03/17)
+sources = [
+    'v%(version)s.tar.gz', # MXNet
+    'https://github.com/dmlc/ps-lite/archive/6856021ca925c7.tar.gz',   # ps-lite
+    'https://github.com/dmlc/mshadow/archive/c29ac58320d7b0.tar.gz',   # mshadow
+    'https://github.com/dmlc/nnvm/archive/0d64855f741e04.tar.gz',      # nnvm
+    'https://github.com/dmlc/dmlc-core/archive/b32ec4aee65a66.tar.gz', # dmlc-core
+]
+
+checksums = [
+    "84971e4a0e2e9db3757623657aa5b9ec",  # v0.9.3.tar.gz
+    "12c96664978c545a7269b93635719b18",  # 6856021ca925c7.tar.gz
+    "3dc48183e123c650707bcf26a9254941",  # c29ac58320d7b0.tar.gz
+    "fb04cb1694f1e66591a31a18bc92b451",  # 0d64855f741e04.tar.gz
+    "da873c881758c0e10ac0928f86568456",  # b32ec4aee65a66.tar.gz
+]
+
+dependencies = [
+    ('Python', '2.7.13'),
+    ('graphviz', '0.7.1', '-Python-%(pyver)s'),
+    ('OpenCV', '3.2.0'),
+    ('R', '3.4.0', '-X11-20170314'),
+]
+
+moduleclass = 'math'