1226 mr bayes #2

itkovian · 2012-06-11T10:04:13Z

The easyblock and easyconfig for MrBayes (fixing the non-MPI build that was previously installed for >= 3.2.0 versions) together with the BEAGLE dependency.

…stead of just one by one

…a .eb file

…sts with non-zero exit code

…Python 3.x)

… in numpy's site.cfg (refs #268) clean up IMKL lib defs in toolkit.py, fix some bugs along the way

…else, and numpy won't find it in e.g. mkl/lib/intel64)

…n't work, see http://bugs.python.org/issue1287)

shorter/cleaner code

add test module for GCC/4.7.2 + sync with develop

make generating recursive unloading modules configurable (and non-default)

minor style fixes

fixes for intelfftw.py

…n code by Marc Litherland) Update easyblock.py Bug fixes round #1 bugfixing round #2 Bugfixes round #3 Bugfixes round #4 Bugfixes #5. Rewritten map() as list comprehension. Still not available as an optional parameter

add --module-syntax configure option, make it work for --module-syntax=Lua, properly handle module header line

sync with develop & resolve conflicts

sync with develop

fix remarks

sync with develop

split up tests for get_total_memory, fix implementation on Darwin

compare *sorted* result of expand_glob_paths in test

specify -fopenmp as general compiler flag for enabling OpenMP mode, enhance tests to check it's handled correctly

add modules that open up way to the top before excluding deps of excluded deps + test case

Gzip patch with tempdir

fix eb_shell_quote + stop using list2cmdline in submit_jobs

add test to check use of --set-default-module (and verify bug fix)

don't pass empty argument to 'module purge'

sync Singularity branch with develop

fix checksum for gzip-1.4.eb test easyconfig in test_exts_list

use constants for open/created/desc + mention incorrect value in error message for --list-prs

allow single-element list as 'sources' value in exts_list

require that $EASYBUILD_BOOTSTRAP_DEPRECATED is defined to run EasyBuild bootstrap script

use transient progress bar, so it disappears when installation is complete

Update Docker support

add tests for det_pr_title

Sync PR#4248 with 5.0.x

boegel added 30 commits April 26, 2012 17:21

add easyconfig for Python with ictce toolkit

0a5cbcc

fix typo in GCC easyconfigs, report on all missing os dependencies in…

13f9f9b

…stead of just one by one

add comments to clarify use of EasyBuild with a directory instead of …

9e69fb6

…a .eb file

added sourceURLs for ScaLAPACK 2.0.1 example easyconfig

71130c1

add patch file for Python with ictce

423f210

fix typo

b6fa646

fix licensepath for Intel compiler tools

3710268

add regtest mode, add ictce patch file for Python

b8a19b8

do *not* exit on failure when regression testing

462ca6b

fix README file to match EasyBuild project page more

1d86b11

Merge branch 'master' of github.com:hpcugent/easybuild

c516671

provide logger to get_blas_lib

abca7bd

add extra unpack options for nose to avoid that unpacking tarball exi…

7167eef

…sts with non-zero exit code

fix linking order for ATLAS BLAS libs

dfd9357

make sure 'python' binary is either there or symlinked (required for …

0a2fd03

…Python 3.x)

fix Python support with ictce toolkit by tweaking specified libraries…

f5d1719

… in numpy's site.cfg (refs #268) clean up IMKL lib defs in toolkit.py, fix some bugs along the way

fix typo

ba796bc

tweak LIBBLAS/LIBLAPACK defs

d01fd70

fix typo

4914f65

specify gfortran as default compiler for numpy/scipy

8ad8987

only use --fcompiler for numpy/scipy

06c11fb

use -Wl: instead of -Wl, to make numpy happy

1ae3e02

fix edit screwup

33ff956

don't include pthread library with MKL (because it resides somewhere …

d946d6d

…else, and numpy won't find it in e.g. mkl/lib/intel64)

improve debugging for unsetting of LDFLAGS

4689af7

strip off trailing whitespace for LIBLAPACK_MT and LIBBLAS_MT

0f250f9

get rid of extra space that screws up numpy lib finding procedure

83c80cf

fix unsetting of LDFLAGS for Python 2.4 (popping from os.environ does…

b378c74

…n't work, see http://bugs.python.org/issue1287)

fix indentation in patch file for Python

5be963a

get rid of double patch file

936d10e

boegel added a commit that referenced this pull request Feb 21, 2013

Merge pull request #2 from stdweird/boegel_ld

2d7b026

shorter/cleaner code

boegel pushed a commit that referenced this pull request Apr 13, 2013

Merge pull request #2 from boegel/clang-toolchains

934f0d4

add test module for GCC/4.7.2 + sync with develop

boegel pushed a commit that referenced this pull request Feb 11, 2014

Merge pull request #2 from boegel/modules-unload-deps

df6c6e6

make generating recursive unloading modules configurable (and non-default)

boegel pushed a commit that referenced this pull request May 7, 2014

Merge pull request #2 from boegel/repository

1a9f87c

minor style fixes

boegel pushed a commit that referenced this pull request Aug 1, 2014

Merge pull request #2 from boegel/imkl_fftw_mpi_fix

051bdf2

fixes for intelfftw.py

rjeschmi referenced this pull request in rjeschmi/easybuild-framework Mar 19, 2015

bugfixing round #2

46f2e53

boegel pushed a commit that referenced this pull request Apr 2, 2015

Merge pull request #2 from boegel/support_lua_modfiles

3b1b695

add --module-syntax configure option, make it work for --module-syntax=Lua, properly handle module header line

boegel pushed a commit that referenced this pull request Jul 11, 2015

Merge pull request #2 from boegel/feature_package_step_w_fpm

bf9db34

sync with develop & resolve conflicts

boegel pushed a commit that referenced this pull request Oct 14, 2015

Merge pull request #2 from boegel/ocaisa_develop

bd65bfc

sync with develop

boegel pushed a commit that referenced this pull request Nov 9, 2015

Merge pull request #2 from boegel/cfenoy_develop

f9c8ce9

fix remarks

boegel pushed a commit that referenced this pull request Nov 27, 2015

Merge pull request #2 from boegel/module_whatis

71b228f

sync with develop

boegel pushed a commit that referenced this pull request Mar 31, 2016

Merge pull request #2 from boegel/availmem

0c709ac

split up tests for get_total_memory, fix implementation on Darwin

boegel pushed a commit that referenced this pull request May 23, 2016

Merge pull request #2 from boegel/include_expand_tilde

da94979

compare *sorted* result of expand_glob_paths in test

boegel pushed a commit that referenced this pull request Nov 4, 2016

Merge pull request #2 from boegel/fix-multi-flag-compiler-options

d0f0138

specify -fopenmp as general compiler flag for enabling OpenMP mode, enhance tests to check it's handled correctly

boegel pushed a commit that referenced this pull request Feb 2, 2017

Merge pull request #2 from boegel/exclude_more_deps

ee19b00

add modules that open up way to the top before excluding deps of excluded deps + test case

boegel pushed a commit that referenced this pull request Mar 27, 2017

Merge pull request #2 from rjeschmi/gzip-patch

648cfe6

Gzip patch with tempdir

boegel pushed a commit that referenced this pull request Mar 30, 2017

Merge pull request #2 from boegel/fix_optarch_job

dbd14f2

fix eb_shell_quote + stop using list2cmdline in submit_jobs

boegel pushed a commit that referenced this pull request Jun 22, 2017

Merge pull request #2 from boegel/set-default-module

a8cf196

add test to check use of --set-default-module (and verify bug fix)

boegel pushed a commit that referenced this pull request Jan 5, 2018

Merge pull request #2 from boegel/env-modules-4

d86561a

don't pass empty argument to 'module purge'

boegel pushed a commit that referenced this pull request Apr 19, 2018

Merge pull request #2 from boegel/package_singularity_develop

1cc817c

sync Singularity branch with develop

boegel pushed a commit that referenced this pull request Nov 6, 2018

Merge pull request #2 from boegel/https_sources

153e0d7

fix checksum for gzip-1.4.eb test easyconfig in test_exts_list

boegel pushed a commit that referenced this pull request Nov 22, 2018

Merge pull request #2 from boegel/list_prs

a8475bb

use constants for open/created/desc + mention incorrect value in error message for --list-prs

boegel pushed a commit that referenced this pull request Jun 12, 2020

Merge pull request #2 from boegel/3290_git_in_exts-list

68ca0b9

allow single-element list as 'sources' value in exts_list

boegel mentioned this pull request Aug 26, 2020

broken installation of 'cffi' extension in Python 2 easyconfig when running EasyBuild with Python 3 and using --rpath #3421

Closed

boegel pushed a commit that referenced this pull request Jun 18, 2021

Merge pull request #2 from boegel/branfosj_develop

8150f1f

require that $EASYBUILD_BOOTSTRAP_DEPRECATED is defined to run EasyBuild bootstrap script

boegel pushed a commit that referenced this pull request Sep 11, 2021

Merge pull request #2 from boegel/show_progress

5a2276d

use transient progress bar, so it disappears when installation is complete

boegel pushed a commit that referenced this pull request Feb 9, 2022

Merge pull request #2 from ocaisa/containers_update

7846210

Update Docker support

branfosj pushed a commit that referenced this pull request Jun 23, 2023

Merge pull request #2 from branfosj/title_suffix

4c3c942

add tests for det_pr_title

lexming pushed a commit that referenced this pull request Mar 18, 2024

Merge pull request #2 from lexming/sync-pr-4248

e1f95b1

Sync PR#4248 with 5.0.x

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1226 mr bayes #2

1226 mr bayes #2

itkovian commented Jun 11, 2012

1226 mr bayes #2

1226 mr bayes #2

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itkovian commented Jun 11, 2012