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Updating Cray support for 2.7.0 #205
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test file
gppezzi 6d67455
Merge branch 'master' of https://github.com/hpcugent/easybuild into cray
gppezzi f8fcba7
renamed cray rst
gppezzi 639e3b7
updated cray
gppezzi 3719acf
Update Cray_support.rst
gppezzi 90d4b36
Update Cray_support.rst
gppezzi a30f403
Update Cray_support.rst
gppezzi fdb4da5
remove -XC suffix
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.. _cray_support: | ||
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EasyBuild on Cray | ||
================= | ||
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As of EasyBuild v2.7.0, Cray support (XC series) is considered stable and it enables building/installing software using the PrgEnv modules provided by Cray. This page provides an overview of the current status. | ||
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For more information about this, contact Kenneth Hoste (HPC-UGent, Belgium; kenneth.hoste@ugent.be) and Petar Forai (IMBA/IMP, Austria; petar.forai@imp.ac.at). | ||
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Thanks to Olli-Pekka Letho (CSC.fi), Tim Robinson and Guilherme Peretti-Pezzi (CSCS.ch), and Eric Bavier (Cray) for providing us access to Cray systems and for their support. | ||
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Test systems | ||
------------ | ||
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* Piz Daint & Piz Dora @ CSCS.ch (http://www.cscs.ch/computers/piz_daint_piz_dora/index.html) | ||
* Santis & Brisi (TDS) @ CSCS.ch | ||
* Sisu @ CSC.fi (https://research.csc.fi/sisu-supercomputer) | ||
* Swan (TDS) @ Cray | ||
* Blue Waters @ NCSA | ||
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EasyBuild toolchains | ||
-------------------- | ||
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* CrayGNU: PrgEnv-gnu with pinned versions of gcc, cray-libsci and cray-mpich | ||
* CrayIntel: PrgEnv-intel with pinned versions of intel, cray-libsci and cray-mpich | ||
* CrayCCE: PrgEnv-cray with pinned versions of cce, cray-libsci and cray-mpich | ||
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versions: | ||
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* Cray*/2015.06: PrgEnv-(*)/5.2.40 (Requires Cray PE June/2015) | ||
* Cray*/2015.11: PrgEnv-(*)/5.2.82 (Requires Cray PE November/2015) | ||
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What works already? | ||
------------------- | ||
(see below for more information) | ||
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* **HPL** (LINPACK) benchmark version 2.1 | ||
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Major scientific software applications | ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | ||
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* **CP2K** 2.6.0 | ||
* **GROMACS** 4.6.7 | ||
* **Python** 2.7.9 + numpy 1.9.2 + scipy 0.15.1 | ||
* **WRF** 3.6.1 (pending on Sisu) | ||
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Required EasyBuild configuration | ||
-------------------------------- | ||
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Modules tool | ||
~~~~~~~~~~~~ | ||
* Sisu: self-installed Lmod 5.8 | ||
* Piz Daint, Dora, Swan, Santis, Brisi: system-provided environment modules 3.2.10 | ||
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Example for C-modules:: | ||
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source /opt/modules/3.2.10.3/init/bash | ||
export PATH=/opt/modules/3.2.10.3/bin/:$PATH | ||
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Architecture | ||
~~~~~~~~~~~~ | ||
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* the craype-<target> module to load must be specified using --optarch | ||
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* e.g., --optarch=sandybridge results in craype-sandybridge being loaded in the build environment used by EasyBuild | ||
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You can also export this option as a shell variable: Example for sandybridge:: | ||
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$ export EASYBUILD_OPTARCH=sandybridge | ||
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Metadata for Cray-provided modules | ||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | ||
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* Easybuild provides a sample metadata file in order to use modules provided by Cray: | ||
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:: | ||
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easybuild-framework/etc/cray_external_modules_metadata.cfg | ||
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* This file is loaded by default and contains enough information to build the easyconfig files shipped with EasyBuild | ||
* If you need to use a customized file, it can be specified using --external-modules-metadata. For more details see :ref:`using_external_modules_metadata` | ||
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Major supported/tested applications | ||
----------------------------------- | ||
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(in alphabetical order) | ||
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CP2K | ||
~~~~ | ||
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* http://www.cp2k.org | ||
* version(s): 2.6.0 | ||
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:: | ||
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$ eb CP2K-2.6.0-CrayGNU-2015.06.eb -dr | ||
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GROMACS | ||
~~~~~~~ | ||
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* http://www.gromacs.org | ||
* version(s): 4.6.7 | ||
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:: | ||
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eb GROMACS-4.6.7-CrayGNU-2015.06-mpi.eb -dr | ||
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HPL | ||
~~~ | ||
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* http://www.netlib.org/benchmark/hpl | ||
* version(s): 2.1 | ||
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:: | ||
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eb HPL-2.1-CrayCCE-2015.06.eb -dr | ||
eb HPL-2.1-CrayGNU-2015.06.eb -dr | ||
eb HPL-2.1-CrayIntel-2015.06.eb -dr | ||
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Python + numpy/scipy | ||
~~~~~~~~~~~~~~~~~~~~ | ||
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* http://python.org, http://www.numpy.org, http://www.scipy.org | ||
* version(s): Python 2.7.9, numpy 1.9.2, scipy 0.15.1 | ||
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:: | ||
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eb Python-2.7.9-CrayGNU-2015.06.eb -dr | ||
# includes a few python packages (such as mpi4py, numpy and scipy) | ||
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WRF | ||
~~~ | ||
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* http://www.wrf-model.org | ||
* version(s): 3.6.1 | ||
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:: | ||
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eb WRF-3.6.1-CrayGNU-2015.06-dmpar.eb --dr |
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@boegel can you show me how to add a link to your metadata doc?
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@gppezzi use this (literally, including backticks)