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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 39 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 30 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 16 5

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 16 13

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 13 2

Repositories

Showing 10 of 180 repositories
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 12 1 Updated Sep 9, 2024
  • atlas-web-single-cell Public

    Single Cell Expression Atlas web application

    ebi-gene-expression-group/atlas-web-single-cell’s past year of commit activity
    Java 5 Apache-2.0 5 65 5 Updated Sep 9, 2024
  • db-scxa Public

    An AtlasProd module for loading scxa-analytics data to postgres.

    ebi-gene-expression-group/db-scxa’s past year of commit activity
    Shell 2 1 4 3 Updated Sep 9, 2024
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 16 MIT 13 26 14 Updated Sep 8, 2024
  • galaxy-gxa-tools-setup Public

    Standard tool installation for GXA Galaxy instances

    ebi-gene-expression-group/galaxy-gxa-tools-setup’s past year of commit activity
    Python 0 2 0 0 Updated Sep 8, 2024
  • atlas-ca-analysis Public

    Atlas analysis for controlled-access bulk datasets, such as EGA

    ebi-gene-expression-group/atlas-ca-analysis’s past year of commit activity
    0 Apache-2.0 0 0 1 Updated Sep 6, 2024
  • atlas-help-pages Public
    ebi-gene-expression-group/atlas-help-pages’s past year of commit activity
    HTML 0 GPL-3.0 2 0 0 Updated Sep 4, 2024
  • atlas-web-core Public

    Business logic for single cell and bulk Expression Atlas and for the up-and-coming Expression Atlas API

    ebi-gene-expression-group/atlas-web-core’s past year of commit activity
    Java 0 1 3 1 Updated Sep 3, 2024
  • curated-metadata Public

    Relevant curated metadata to be consumed by Atlas Prod pipelines and Atlas Web Applications

    ebi-gene-expression-group/curated-metadata’s past year of commit activity
    Python 2 0 0 0 Updated Aug 27, 2024
  • scanpy-scripts Public

    Scripts for using scanpy

    ebi-gene-expression-group/scanpy-scripts’s past year of commit activity
    Python 30 Apache-2.0 13 11 4 Updated Aug 22, 2024
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