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@eblerjana eblerjana released this 23 Mar 13:40
· 101 commits to master since this release
v2.1.1
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Learn about vigilant mode.

Due to the changes released in version v2.1.0, the HMM underlying PanGenie is much faster now. Therefore, larger panel sizes can be processed. Per default, PanGenie splits the input panel into smaller chunks if it contains more than 25 haplotypes and runs genotyping on each of them. Results are later combined. So far, the sizes of these chunks were 14. Now, the panel is split only if there are more than 90 haplotypes. Sizes of the chunks are now 45. With these larger chunk sizes, the accuracy of PanGenie is now better compared to the previous version v2.1.0.

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