"None of the genes were in the PIN"

[Jmperez2080]

Hi,

I'm looking to do a pathway analysis on a proteomics data set (where I compare treatment vs. control). I have my "gene symbols" as protein accession numbers. Is there a PIN I can download that corresponds to protein accession numbers (organism: homo sapiens)?

If not, is there a better way to use pathfindR with proteomics datasets?

Thank you!

[egeulgen]

Hey @Jmperez2080,

I would suggest that the easiest way is to convert your identifiers into HGNC symbols. For this, you can use Ensembl's BioMart or the R package for it: biomaRt.

Best,
-E