Pathway score calculations?

[junli1988]

Hi, I have a new question. I've read through your article on Frontiers in Genetics and I'm interested in the pathway scores function of the package. So when I'm using the command for score_terms(), should I use normalized data or raw transcript counts in the exp_matrix line? Does it matter? Thanks in advance.

[egeulgen]

Hello,
I would suggest using normalized data.
-E