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1. vgteam/vg vgteam/vg Public

   tools for working with genome variation graphs

   C++ 1.1k 194

2. waveygang/wfmash waveygang/wfmash Public

   base-accurate DNA sequence alignments using WFA and mashmap3

   C++ 177 19

3. pangenome/pggb pangenome/pggb Public

   the pangenome graph builder

   Shell 396 44

4. seqwish seqwish Public

   alignment to variation graph inducer

   C++ 143 18

5. pangenome/smoothxg pangenome/smoothxg Public

   linearize and simplify variation graphs using blocked partial order alignment

   C++ 56 7

6. freebayes/freebayes freebayes/freebayes Public

   Bayesian haplotype-based genetic polymorphism discovery and genotyping.

   C++ 790 265