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The refactoring in #1175 broken the compare subcommand due to reliance on the `show-in-report` cli argument. As prior to the PR the subcommand parsing logic was obscure the problem surfaced now. This commit defaults the parameter `show-in-report` for the compare subcommand to True. This parameter could be removed in the future, the reason for adding it in the past was that some users relied on parsing the report file and the comparison adds fields (like percentiles) dynamically.
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