Add IDTk in the corresponding pages #997
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Validation of the tools and page metadata | |
| on: | |
| pull_request: | |
| branches: [ master, main ] | |
| schedule: | |
| - cron: '0 13 * * 1' | |
| workflow_dispatch: | |
| jobs: | |
| validation: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruamel.yaml requests python-frontmatter | |
| - name: Run tool table 2 yaml | |
| run: | | |
| python var/tools_validator.py | |
| registry-lookup: | |
| if: | | |
| github.repository_owner == 'elixir-europe' && github.event_name != 'pull_request' | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: [3.8] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install ruamel.yaml requests python-frontmatter | |
| - name: Run regsitry lookup for the tools file | |
| run: | | |
| python var/tools_validator.py --reg --username ${{ secrets.FAIRSHARING_USERNAME }} --password "${{ secrets.FAIRSHARING_PASSWORD }}" | |
| - name: Update markdown pages with DSW links | |
| run: | | |
| python var/dsw_integration.py | |
| - name: Get faircookbook-rdmkit repository | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: elixir-europe/faircookbook-rdmkit | |
| path: faircookbook-rdmkit | |
| ref: main | |
| - name: Update markdown pages with FAIR Cookbook links | |
| run: | | |
| python var/faircookbook_integration.py ${GITHUB_WORKSPACE}/faircookbook-rdmkit/faircookbook_rdmkit_mapping.yml | |
| - name: Deleting faircookbook-rdmkit repository | |
| run: | | |
| rm -r faircookbook-rdmkit | |
| - name: Show differences | |
| run: | | |
| git diff --stat | |
| - name: Create Pull Request | |
| id: cpr | |
| uses: peter-evans/create-pull-request@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| commit-message: Update tool/resource_list.yaml | |
| title: 'Automatic tool/resource-list update' | |
| body: | | |
| This PR is automatically generated based on changes in the main_tool_and_resource_list.csv file or based on new links made between the tool table and TeSS. | |
| Please verify if these changes are valid. | |
| labels: | | |
| automatic PR | |
| reviewers: bedroesb | |
| branch: list_updates | |
| base: master | |
| - name: Check output | |
| run: | | |
| echo "Pull Request Number - ${{ steps.cpr.outputs.pull-request-number }}" |