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Fixed study directories to avoid nesting
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johnyaku committed Mar 15, 2021
1 parent be2acc3 commit d09ded2
Showing 1 changed file with 0 additions and 2 deletions.
2 changes: 0 additions & 2 deletions study/init.sh
Original file line number Diff line number Diff line change
Expand Up @@ -5,8 +5,6 @@ SCRIPT_DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"

DATAHUB_STUDIES="${DATAHUB_STUDIES:-lgg_ucsf_2014}"
for study in ${DATAHUB_STUDIES}; do
mkdir -p ${study} && \
cd ${study} && \
wget -O ${study}.tar.gz "https://cbioportal-datahub.s3.amazonaws.com/${study}.tar.gz"
tar xvfz ${study}.tar.gz
done

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