bTB Whole Genome Sequencing Application
apt install python3-flask python3-requests
git clone https://github.com/aphascience/bTBWGS.git
cd bTBWGS
python main.py
- Python Flask (http://flask.pocoo.org/)
- Leaflet for Map View (https://leafletjs.com/)
- GeoTools for WGS84-OSGB36 conversions (https://www.nearby.org.uk/tests/GeoTools2.html)
- Search a sample and show the related herd on the map
- Show sample related cattle movements on the map
- Search genetic neighbourhood of a sample and show all herds on the map
- Cluster all sample based on their genetic distance and show them on the map
- View sub-cluster within a cluster on the map