InterMine API Examples (Python)

GitHub: https://github.com/intermine/intermine-ws-python

Installation

Install the intermine python module (requires pandas and requests as dependencies):

$ pip install intermine
$ pip install requests
$ pip install pandas

Additionally, these example scripts use the Python-dotenv package to manage API keys:

pip install python-dotenv

Then download the example scripts:

$ git clone https://github.com/elsiklab/intermine-api-python-examples.git

Running the example scripts

Due to relative paths, each example script must be run from the directory where it's located:

$ cd <mine_dir>
$ ./script_name.py

Example:

$ cd aquamine
$ ./aquamine_region_search_example.py