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@emdb-empiar

EMDB and EMPIAR

Public archives for 3D structural and imaging data from cryo-EM and related imaging modalities

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  1. ahds ahds Public

    Python package to parse and provide access to headers and data streams in Amira(R) files

    Python 7 2

  2. sfftk sfftk Public

    Toolkit for working with EMDB-SFF and other segmentation file formats

    Python 6 3

  3. empiar-depositor empiar-depositor Public

    Python package for depositing into EMPIAR

    Python 6 4

  4. noid noid Public

    Mint NOIDs using a CLI or API

    Python 5 3

  5. emdb-xml-translator emdb-xml-translator Public

    A set of translators for converting EMDB XML files 1.9 <-> 3.0 <-> 1.9

    Python 2

  6. sfftk-rw sfftk-rw Public

    Toolkit for reading and writing EMDB-SFF files

    Python 2

Repositories

Showing 10 of 26 repositories
  • noid Public

    Mint NOIDs using a CLI or API

    emdb-empiar/noid’s past year of commit activity
    Python 5 3 0 0 Updated Aug 31, 2024
  • emdb-json-schemas Public

    JSON Schemas for files describing the EMDB archive

    emdb-empiar/emdb-json-schemas’s past year of commit activity
    0 0 0 0 Updated Jul 10, 2024
  • emdb-xml-translator Public

    A set of translators for converting EMDB XML files 1.9 <-> 3.0 <-> 1.9

    emdb-empiar/emdb-xml-translator’s past year of commit activity
    Python 2 0 0 0 Updated Jun 5, 2024
  • emdb-molstar Public Forked from molstar/pdbe-molstar

    Molstar EMDB implementation

    emdb-empiar/emdb-molstar’s past year of commit activity
    TypeScript 0 Apache-2.0 30 0 0 Updated Jun 4, 2024
  • SPW Public

    EMPIAR Sample Preparation Collection Schema

    emdb-empiar/SPW’s past year of commit activity
    1 0 0 0 Updated May 2, 2024
  • emdb-schemas Public

    A collection of emdb.xsd schemas

    emdb-empiar/emdb-schemas’s past year of commit activity
    Python 0 0 0 0 Updated Apr 24, 2024
  • empiar-depositor Public

    Python package for depositing into EMPIAR

    emdb-empiar/empiar-depositor’s past year of commit activity
    Python 6 Apache-2.0 4 0 1 Updated Feb 29, 2024
  • sfftk Public

    Toolkit for working with EMDB-SFF and other segmentation file formats

    emdb-empiar/sfftk’s past year of commit activity
    Python 6 Apache-2.0 3 0 0 Updated Feb 26, 2024
  • bandbox Public

    bandbox is a CLI tool to quickly evaluate how organised your dataset is.

    emdb-empiar/bandbox’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jan 2, 2024
  • sfftk-plus Public

    Extended toolkit for working with EMDB-SFF and OMERO (using VTK for geometrical manipulation)

    emdb-empiar/sfftk-plus’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 29, 2023

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