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Releases: enasequence/webin-cli

8.1.1

16 Jan 14:41
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Release notes:

  • Read context: added support for Illumina NovaSeq X Plus and DNBSEQ-T10×4RS instrument model.
  • Genome context: block submissions with chromosome names specified as "contig" or "scaffold"
  • Genome context: Enhancements to prevent overlapping gaps.

8.1.0

11 Oct 13:06
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Release notes:

  • genome context : AGP file support has been removed.
  • All contexts : General security updates.

8.0.0

20 Aug 12:52
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Release notes:

  • All contexts : Only supports Java 17 and above.
  • read context : uses latest tools for file processing.
  • read context : bz2 compressed file format is now supported.
  • read context : fixes how NOT_AUTCG characters are counted. previously it was per read and not per sample, which was incorrect.
  • read context : other improvements and fixes.

7.3.1

09 Jul 15:12
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7.3.0

12 Jun 12:09
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Release notes:

  • genome, transcriptome and sequence contexts: Support new qualifier /geo_loc_name as a replacement for the /country qualifier. Any /country qualifiers will be automatically converted to /geo_loc_name qualifier.

7.2.1

21 May 12:02
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Release notes:

  • genome and sequence contexts: Fixed the following error from being erroneously reported when the feature was 5' partial: Protein coding feature can be a single stop codon only if it has 3 bases and is 5' partial.
  • genome and sequence contexts: Fixed a bug where partiality was erroneously rejected when using the order operator
  • genome and sequence contexts: Fixed the following error from being erroneously reported: Anticodon amino acid abbreviation "..." is not matching with the sequence "..." using translation table "...".

7.2.0

02 May 10:10
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Release notes:

  • All contexts: support multiple submissions when using the JSON manifest. It is now possible to give an array of multiple JSON manifest objects in the manifest file instead of a single object.

7.1.1

18 Mar 14:18
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Release notes:

  • assembly, template, sequence context: support 'Czechia' country value in samples and sequence submissions.

7.1.0

14 Mar 12:52
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Release notes:

  • All contexts: added a file modification date based check that makes sure that data files are not modified between validation and submission.

7.0.1

14 Feb 16:44
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Release notes:

  • all contexts: Fixed the submission problem where sample retrieval fails with the following error: 'Failed to initialise validator. Could not retrieve BioSample'.
  • This error prevents samples from being referenced by BioSample or SRA sample accession in all Webin-CLI 6.* versions and in the Webin-CLI 7.0.0 version.
  • This error was introduced 1st of February 2024.