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In-development R package to nowcast right-truncated epidemiological data

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epinowcast/baselinenowcast

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Baseline nowcast (in development)

Lifecycle: stable R-CMD-check Codecov test coverage MIT license GitHub contributors

Summary

Provides functions for nowcasting right-truncated epidemiological data, based heavily on the method implemented in https://github.com/KITmetricslab/RESPINOW-Hub/tree/main/code/baseline

Installation

Installing the package

To install the development version from GitHub (warning! this version may contain breaking changes and/or bugs), use the pak package:

pak::pak(file.path("epinowcast", "baselinenowcast"))

Resources

We provide a range of other documentation, case studies, and community spaces to ask (and answer!) questions:

Organisation Website

Our organisation website includes links to other resources, guest posts, and seminar schedule for both upcoming and past recordings.

Community Forum

Our community forum has areas for question and answer and considering new methods and tools, among others. If you are generally interested in real-time analysis of infectious disease, you may find this useful even if you do not use baselinenowcast.

Contributing

We welcome contributions and new contributors! We particularly appreciate help on identifying and identified issues. Please check and add to the issues, and/or add a pull request and see our contributing guide for more information.

How to make a bug report or feature request

Please briefly describe your problem and what output you expect in an issue. See our contributing guide for more information.

Code of Conduct

Please note that the baselinenowcast project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Citation

If you use baselinenowcast in your work, please consider citing it with citation("baselinenowcast").

Contributors

All contributions to this project are gratefully acknowledged using the allcontributors package following the allcontributors specification. Contributions of any kind are welcome!

kaitejohnson, seabbs, sbfnk

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In-development R package to nowcast right-truncated epidemiological data

Resources

License

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MIT
LICENSE.md

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