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WIP: Sanitizer build with Ubuntu 20.04 #3636

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WIP: Sanitizer build with Ubuntu 20.04 #3636

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bc403cb
CMake: Exclude some boost MPI from clang-tidy
RudolfWeeber Apr 6, 2020
eb2164e
CI: Add Ubuntu 20.04 build
RudolfWeeber Apr 6, 2020
79638aa
Formatting
RudolfWeeber Apr 6, 2020
c979dff
CI: Disable Cuda on Ubuntu 20.04 job
RudolfWeeber Apr 6, 2020
fc393d0
CI: Ubuntu 20.04 select clang
RudolfWeeber Apr 6, 2020
c1beb3d
Cython: build with -Wno-deprecated-declarations
RudolfWeeber Apr 6, 2020
c8b988c
UBSAN: Suppressions file
RudolfWeeber Apr 7, 2020
3b4eb1e
CI: Use UB Sanitizer suppressions in Ubuntu 20.04 job
RudolfWeeber Apr 7, 2020
2657aff
CI: Path to UBSAN supressions
RudolfWeeber Apr 7, 2020
9eab049
Merge branch 'python' into u2004
RudolfWeeber Apr 7, 2020
a88e7bd
Merge branch 'python' of git://github.com/espressomd/espresso into py…
RudolfWeeber Apr 9, 2020
a6f5040
Workaround Thrust compilation with Clang bug
RudolfWeeber Apr 9, 2020
1954401
CI: Enable CUDA on Ubuntu 20.04 sanitizer build
RudolfWeeber Apr 9, 2020
8af479d
Merge branch 'u2004' of ssh://github.com/RudolfWeeber/espresso into p…
RudolfWeeber Apr 9, 2020
12dcf03
Missing file
RudolfWeeber Apr 9, 2020
246afd4
Include file sorting
RudolfWeeber Apr 9, 2020
1c8c37d
CI: 2h time out for Ubuntu 20 sanitizer job
RudolfWeeber Apr 9, 2020
0ac6628
Clang+Thrust: Guard against double presence of workaround
RudolfWeeber Apr 9, 2020
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11 changes: 11 additions & 0 deletions .gitlab-ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -102,6 +102,17 @@ no_rotation:
- docker
- linux

ubuntu-20.04-sanitizer:
<<: *global_job_definition
image: docker.pkg.github.com/espressomd/docker/ubuntu-20.04:a1192b35590a1a474c55fe1e9a1e6c25758454ea
stage: build
script:
- export myconfig=maxset with_cuda=false with_coverage=false with_static_analysis=true with_asan=true with_ubsan=true test_timeout=900 ASAN_OPTIONS="allocator_may_return_null=1" OMPI_CC=clang-9 OMPI_CXX=clang++-9 CC=clang-9 CXX=clang++-9 UBSAN_OPTIONS=suppressions=/home/espresso/espresso/maintainer/CI/ubsan.supp
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- bash maintainer/CI/build_cmake.sh
tags:
- docker
- linux

### Builds with different Distributions

debian:10:
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4 changes: 3 additions & 1 deletion CMakeLists.txt
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Expand Up @@ -375,7 +375,9 @@ endif()

if(WITH_CLANG_TIDY)
find_package(ClangTidy "${CMAKE_CXX_COMPILER_VERSION}" EXACT REQUIRED)
set(CMAKE_CXX_CLANG_TIDY "${CLANG_TIDY_EXE}")
set(CLANG_TIDY_EXCLUDES "[{name: boost/mpi/collectives/all_reduce.hpp}]")
set(CMAKE_CXX_CLANG_TIDY
"${CLANG_TIDY_EXE};--line-filter=${CLANG_TIDY_EXCLUDES}")
endif()

if(WITH_TESTS)
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10 changes: 10 additions & 0 deletions maintainer/CI/ubsan.supp
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@@ -0,0 +1,10 @@
# Stuff occuring in boost directly
null:boost/serialization/singleton.hpp
null:boost/mpi/detail/binary_buffer_iprimitive.hpp
null:boost/mpi/communicator.hpp

# Caused by boost MPI
null:stl_iterator.h

# function calls with invalid pointers in Cython-generated code
function:python/espressomd/*.cpp
4 changes: 2 additions & 2 deletions src/python/espressomd/CMakeLists.txt
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Expand Up @@ -105,15 +105,15 @@ foreach(cython_file ${cython_SRC})
${outputpath}
PROPERTIES
COMPILE_FLAGS
"-Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable"
"-Wno-pedantic -Wno-cpp -Wno-strict-aliasing -Wno-maybe-uninitialized -Wno-unused-variable -Wno-deprecated-declarations"
)
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "Clang" OR CMAKE_CXX_COMPILER_ID
STREQUAL "AppleClang")
set_source_files_properties(
${outputpath}
PROPERTIES
COMPILE_FLAGS
"-Wno-pedantic -Wno-#warnings -Wno-sometimes-uninitialized -Wno-unused-variable"
"-Wno-pedantic -Wno-#warnings -Wno-sometimes-uninitialized -Wno-unused-variable -Wno-deprecated-declarations"
)
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "Intel")
set_source_files_properties(${outputpath} PROPERTIES COMPILE_FLAGS
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