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System for assigning and automatic grading of Jupyter notebooks

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Grading system for Python course

This is a system for assigning and automatic grading of Jupyter notebooks. Communication between students and the grading system is implemented via email. To release assignments to students, Google Drive is used.

A short explanation of the grader work:

  1. Teacher sets up the course backend: downloads the source code, adds lessons and publishes them for students. Adding lessons image

  2. Student downloads an assignment from the Google Drive folder, solves it, composes an email message with the solution files attached, and sends it to the teacher. Sending submissions image

  3. The grading system parses email messages, grades them with tests prepared by the teacher (hidden from students).

  4. If the submission is correct, the feedback message with grades is sent to the student. Feedback message image

    If something is wrong with the submission, the error message is sent to the student. Unknown user message image

How to set up a course

Step 1: Download source code

First, you should download the source code and rename .env.template file to .env. How to specify environment variables in the .env file is written below.

Step 2: Specify course details

Set the name of the course (for example, "Python course") to COURSE_NAME variable.

The value of TEACHER_EMAIL is used in feedbacks or in service messages which are sent when the grading system fails.

Step 3: Prepare exchanger

The exchanger is responsible for fetching new submissions and sending feedbacks after grading. This implementation uses email communication via Gmail API.

To set it up:

  1. Create a project on the Google Cloud.
  2. Enable Gmail API, create an OAuth client account for desktop applications, and download its keys in json format. See Gmail API docs for details.
  3. Insert the keys as a json string in the .env file under GMAIL_CREDS variable.
  4. Set GMAIL_FETCH_LABEL (for example, "Python course for masters"). Each message with this label will be considered as a submission.
  5. Create a Gmail filter. It can be created manually via Gmail client or automatically. In the latter case, it is necessary to set GMAIL_FETCH_KEYWORD and GMAIL_FETCH_ALIAS. All messages that are addressed to GMAIL_FETCH_ALIAS and contain GMAIL_FETCH_KEYWORD in the subject will be marked with GMAIL_FETCH_LABEL.
  6. Set GMAIL_SENDER_NAME and GMAIL_SENDER_EMAIL to specify the "from" part of outgoing messages.

Step 4: Prepare database

The grading system uses a database. It can be MySQL , PostgreSQL, or any other database that is supported by SQLAlchemy.

You must set DB_DRIVER, DB_HOST, and DB_PORT for database connection. It is considered that DB_NAME is used to store the course data, and DB_GRADER_USER with DB_GRADER_PASSWORD has superuser permissions for the database specified by the DB_NAME variable. DB_ROOT_PASSWORD is used only when the database is created in a docker container.

The DB_NAME database must be previously created. However, all the necessary tables will be created and populated automatically.

Step 5: Specify service parameters

When the grading system fails, it is necessary to notify the teacher. In this case, a service email with exception traceback is sent to the TEACHER_EMAIL via SMTP server. So, the parameters SERVICE_EMAIL_LOGIN , SERVICE_EMAIL_PASSWORD must be specified to connect to the SMTP server SERVICE_EMAIL_SERVER via SERVICE_EMAIL_PORT port.

Step 6: Install dependencies

All the necessary dependencies are listed in requirements.txt. So, you should install Python 3.9 (or newer) on your system, create a virtual environment, and install packages as usual:

pip install -r requirements.txt

To enable the necessary extensions in Jupyter, run this in the terminal:

jupyter nbextension install --sys-prefix --py nbgrader --overwrite
jupyter nbextension enable --sys-prefix --py nbgrader
jupyter serverextension enable --sys-prefix --py nbgrader

Step 7: Add lessons

The grading system uses nbgrader tool under the hood. Thus, details of assignments creating, description of the folder structure, and content of the nbgrader_config.py file can be found in its docs.

To add an assignment, you should launch Jupyter from the project root, move to Formgrader page and click on Add new assignment. Use can use add_lesson.py script to do the same.

Open the assignment source folder, add a notebook and necessary files. Note that the name of the notebook must match the assignment name.

The notebook should contain tasks for students. Each task must consist of the following cells:

  1. One read-only markdown cell with the text of pattern TODO: <Task name>. These task names will be automatically parsed for feedbacks. The pattern of task names can be changed in definitions.py.
  2. One or several cells with ### BEGIN SOLUTION and ### END SOLUTION comments where the solution should be written. Mark these cells as Autograded answer. See, nbgrader docs for more details.
  3. One cell with ### BEGIN HIDDEN TESTS and ### END HIDDEN TESTS comments for tests. Mark these cells as Autograded tests. See, nbgrader docs for more details. Specify max score for each test cell. The sum score of the assignment should be equal to 100.

Lesson template can be found here.

After lesson content is prepared, click Generate in the Formgrader page of Jupyter to create a release version of the lesson. Now, you can see how your assignment will look to students.

Step 8: Add users

To add a user, you can launch Jupyter from the project root, move to Formgrader, next to Manage Students, and click on Add new student. Next, specify all the fields Student ID, First name, Last name, Email. The Student ID and Email must be unique and non-empty.

You can also use add_user.py script which automatically creates student ids, validates emails, and makes other necessary checks.

Step 9: Publish lessons

When you are ready to send assignments to students, you can run publish_lesson.py script. This will generate student versions of the lessons and upload them to Google Drive.

Before this, you must complete some preparations:

  1. Enable Google Drive API for your project created at Step 3, create a service account, and download its keys in json format. See Google Drive API docs for details.
  2. Insert the keys as a json string in the .env file under GDRIVE_CREDS. Copy email of the service account.
  3. Create a folder GDRIVE_PUBLISH_FOLDER in your Google Drive where you are going to store public version of assignments. Share this folder and grant " editor" permissions with the email from the previous step.

It's time to run publish_lesson.py script. This will create all necessary folders in your Google Drive folder, share the folders with links, and upload files. However, this will be made automatically when the grading system starting.

Do not modify cloud release folders on your own. If you want to change something, make this locally and run the release script again. Shared folders and their links will stay the same, however, their content will be changed.

Step 10: Start grading

To start the grading process, run main.py from the project root.

Student should download assignments from the Google Drive release folder, insert solutions and send files as attachments to GMAIL_FETCH_ALIAS. It is considered that each message with a submission has a subject of the structure "GMAIL_FETCH_KEYWORD / lesson name". In several minutes, the corresponding feedback will be sent to the student.

Progress of students can be found in Formgrader page of Jupyter.

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