Code

Doe categorical second attempt#259

Code

Merged

ufukguenes merged 125 commits intomainexperimental-design/bofire:mainfrom doe_categoricalexperimental-design/bofire:doe_categoricalCopy head branch name to clipboardAug 16, 2023

+1,634-71

Commits

Commits on May 24, 2023

• setting up bofire

  

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  61d2557

Commits on May 31, 2023

• simple relaxed categorical example in jupyter notebook

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  9bc67b3

• merging main

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  e0b15b3

Commits on Jun 15, 2023

• adding exhaustive search for optimization problems with binary variables and writing tests

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  63f41bb

• showcasing how to use binary variables

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  27c8ba5

Commits on Jun 20, 2023

• changes in jupyter notebooks

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  9af4768

• merging main

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  bbb76c8

Commits on Jun 28, 2023

• adding constraint mapper

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Commits on Jul 3, 2023

• fixing bug with dtype

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  6c22b3d

Commits on Jul 4, 2023

• stated change to one-hot-encoding

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Commits on Jul 5, 2023

• allowing for multiple groups

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Commits on Jul 7, 2023

• starting with branch-and-bound

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• rough sketch of bnb

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  588900b

Commits on Jul 10, 2023

• asserting that design variables is actually a 1d array

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• asserting that design variables is actually a 1d array

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• using the right argument for optimality criteria

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  3275b96

• finishing first bab implementation

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• changing __str__

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• resetting test for valid solution

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  a272191

Commits on Jul 11, 2023

• printing information of branching

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  ac33853

• allowing for relaxed discrete variables, and fixing bug with sequence of column keys in dataframe

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  7c5c952

• fixing docstring

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  831858e

Commits on Jul 12, 2023

• skipping non-valid-designs and branching for discrete values

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  3d14cff

• catching case for list length 1

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  09291e1

Commits on Jul 13, 2023

• cringe... renaming function

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• removing redundant code

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• bug fix/ removing code with no effect

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  fe8d243

• renaming variable to make intention clear

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  9c81814

Commits on Jul 18, 2023

• start including new doe strategies in api

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  cbe6279

• adding categorical groups to the domain

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  26f7741

• changing to categorical groups from domain

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  d668b52

• correcting docstring

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  d03b51c

• start writing tests for categorical and discrete variables

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  d9d4da8

• catching branches in exhaustive search which do not fulfill constraints

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  c3d2782

Commits on Jul 19, 2023

• simple tests for bab and exhaustive search

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  74961dc

• adding optional print statements for information about the optimization process

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  ea300ac

• adding optional print statements for information about the optimization process

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  a066fd0

• bug fix, allowing arbitrary objective function and model_type

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  2656f4d

• bug fix, fixing and partially fixing experiments can now be combined

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  bca60fe

• skipping branches with already fixed experiments

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  9306304

• skipping branches with already fixed experiments in exhaustive search

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  44ff17a

• removing unused code from binary vars and giving warning when unsuitable attributes are passed

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• adding documentation

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• adding documentation

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  61a7c48

• adding documentation

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  1bdf2bb

• adding documentation

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  aa13771

• bug fix, now also testing if solution for discrete variables are also valid

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  a3f808f

• bug fix, now also testing if solution for discrete variables are also valid

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  b810036

• adding documentation

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  a8398fd

• Merge branch 'main' into doe_categorical

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  ba3197a

• bug fix, where error occurred if fixed_experiments was None

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  942169b

Commits on Jul 20, 2023

• adjusting tolerances for testing for valid solution

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  bc5f280

Commits on Jul 24, 2023

• adjusting tolerances for testing for valid solution

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  f748993

Commits on Jul 25, 2023

• raising error when to many (partially)-fixed experiments are provided

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  3d853d0

• bug fix, sorting (partially) fixed experiments and initial guess if provided

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  609d44c

• adapting branch-and-bound to new fixed experiments usage

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  81e8f9f

Commits on Jul 26, 2023

• bug fix, allowing to fix candidates with .tell

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  2da0a43

Commits on Jul 27, 2023

• allowing to partially fix experiments with .tell and with all strategies

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  bf5b3ae

Commits on Jul 28, 2023

• allowing to use either equality or inequality and changing rhs

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  9cf64be

• reverting, we can only do exactly 1,

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  564a472

Commits on Jul 29, 2023

• bug fix, if partially_fixed_experiments are none, and adding time information to verbose output

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  c90bedb

Commits on Jul 30, 2023

• adding error for using discrete var in exhaustive search, bug fix where order of variables lead to fixing wrong variables, bug fix with where partially fixed experiments is none

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• renaming

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  66bc550

Commits on Aug 1, 2023

• adding information about how many branches have been explored

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  92e3249

Commits on Aug 2, 2023

• added NChooseKGroup_with_quantity (helper function) and mapping from discrete domain to relaxable domain

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  0f27616

• bug fix, NChooseKGroup_with_quantity (helper function) and allowing to choose between current categorical variables (and NonLinearConstraints) or relaxable categorical variables (and LinearConstrai…

  Show description for 4b0ea1d
  ufukguenes

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  4b0ea1d

• making some arguments optional

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  067290d

• fixing optional arguments

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  e540695

• adding documentation

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  0419bd8

Commits on Aug 3, 2023

• Update documentation bofire/data_models/constraints/nonlinear.py

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  ufukguenes

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  jduerholt

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  2f51808

• Merge branch 'main' into doe_categorical

  ufukguenes

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  e7b1744

Commits on Aug 7, 2023

• refactoring RelaxableBinaryInput, RelaxableDiscreteInput, they are not accessible through the public api anymore.

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  1e18faf

• refactoring generate_mixture_constraint and deleting unused functions

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  c0e075c

• allowing to use the old strategy to solve nchoosek constraints

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Commits on Aug 8, 2023

• reversing accidental commit

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  aaf4186

• refactoring functions

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  8b75c06

• removing check for initial guess, as we can also allow non-valid initial points

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• adding initial guess based on design of previous branch

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• bug fix

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  69b9321

• Merge branch 'main' into doe_categorical

  ufukguenes

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  d9368fb

• deleting old example

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• merge main

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• Merge branch 'main' into doe_categorical

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  bf444ce

• fixing typing

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  7ec9c9d

Commits on Aug 9, 2023

• looser tolerances and pruning branches where ipopt does not satisfy constraints

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  755817f

• skipping fixations where ipopt does not satisfy constraints

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  c80f87a

• reverting commit, where I skip the is_fulfilled test

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• typing

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• adding not implemented error

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• typing

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• fixing tests

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  0ffb9ed

• Merge branch 'doe_categorical' of https://github.com/experimental-design/bofire into doe_categorical

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• Delete .gitattributes

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• Delete .idea directory

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• typing

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  bedd26c

Commits on Aug 10, 2023

• removing outdated tests, and fixing existing ones

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  b1c3101

• evaluating with d_optimality requires a 1D array

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  b6a43ee

• adding test for categorical and discrete doe with nchoosek

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• Merge branch 'main' into doe_categorical

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• typing

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• typing

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• Merge branch 'main' into doe_categorical

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  1c5e61a

• adding random seed

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  38e8918

• adapting test

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  f2f5f5a

• adapting (partially) fixed experiments

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  5300768

Commits on Aug 11, 2023

• typing

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Commits on Aug 14, 2023

• ignore typing

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  6041d28

• ignore typing

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• started beautiful fix

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  f4804c0

• reverting beautiful fix

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  a89bced

• quick fix

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  c98e5ac

• Update test_doe.py

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• fix test

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• merge

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  385ed9f

• going back to beautiful fix

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  6fa912c

• removing Relaxable Features

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  40bd6ef

• deleting unnecessary check

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  0e04efb

Commits on Aug 15, 2023

• adding set candidates and test

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  fa23eb7

• typing

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  3918ade

• typing

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• bug fix

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  8769201

• refactoring

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• removing unnecessary line

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• merging tutorials from main

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• merging tutorials from main

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