Update snv_annotation.config (genomic-medicine-sweden#98)

Full size test fails because only `BCFTOOLS_NORM_SINGLESAMPLE` and not `BCFTOOLS_NORM` was actually decomposing variants.
fellen31 · Apr 24, 2024 · 5173489 · 5173489
1 parent 79a4113
commit 5173489
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/conf/modules/snv_annotation.config b/conf/modules/snv_annotation.config
@@ -28,6 +28,10 @@ process {
         ext.prefix = { "${meta.id}_ac" }
     }
 
+    withName: '.*:SNV_ANNOTATION:BCFTOOLS_NORM' {
+        ext.args = "-m - --output-type b -w 10000"
+    }
+
     withName: '.*:SNV_ANNOTATION:BCFTOOLS_NORM_SINGLESAMPLE' {
         ext.args = "-m - --output-type b -w 10000"
     }