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TMT sample graph traversal #46

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cpanse opened this issue Feb 7, 2023 · 4 comments
Open

TMT sample graph traversal #46

cpanse opened this issue Feb 7, 2023 · 4 comments
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@cpanse
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cpanse commented Feb 7, 2023 •
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generate all the output needed for FragPipe TMT run

input: WU yaml config
output:
- sampleGraph.dot
- FragPipe manifest
- annotation
cpanse added a commit that referenced this issue Feb 7, 2023
@cpanse
Initial #46
e90d97c
@cpanse
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cpanse commented Feb 7, 2023

IMG_0247

@tobiasko
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tobiasko commented Feb 7, 2023

Please test using

https://fgcz-bfabric-test.uzh.ch/bfabric/order/show.html?id=30781&tab=details

@tobiasko
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tobiasko commented Feb 7, 2023

I am not sure how to assign matching resources to the fractions. We need to have TMT10plex files available.

@cpanse
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cpanse commented Feb 7, 2023

graph2

mariaderrico pushed a commit that referenced this issue Feb 13, 2023
@mariaderrico
Add functionality to write annotation files
8b3d3f7 
- Issue #46
- Get an annotation file template as input.
- Create a folder for each experiment where to write the updated
annotation file.
mariaderrico pushed a commit that referenced this issue Feb 14, 2023
@mariaderrico
Write manifest file
fd63fd3 
Issue #46
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@cpanse @tobiasko @mariaderrico