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@fhalab

Arnold Lab

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  1. MLDE MLDE Public

    A machine-learning package for navigating combinatorial protein fitness landscapes.

    Python 122 26

  2. evSeq evSeq Public

    Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.

    Python 32 9

  3. embeddings_reproduction embeddings_reproduction Public

    Jupyter Notebook 127 32

  4. SPGen SPGen Public

    Jupyter Notebook 19 4

  5. channels channels Public

    Gaussian process models for optimizing channelrhodopsin properties.

    Jupyter Notebook 11 14

Repositories

Showing 10 of 11 repositories
  • LevSeq Public

    Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.

    fhalab/LevSeq’s past year of commit activity
    Makefile 5 GPL-3.0 1 0 1 Updated Feb 11, 2025
  • LevSeq_db Public

    Visualization for the LevSeq project

    fhalab/LevSeq_db’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Jan 27, 2025
  • SSMuLA Public

    Code base for "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"

    fhalab/SSMuLA’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 1 0 0 Updated Dec 23, 2024
  • alde4ssmula Public

    ALDE simulation runs for SSMuLA (Site Saturation Mutagenesis Landscape Analysis), the code base paper titled "Evaluation of Machine Learning-Assisted Directed Evolution Across Diverse Combinatorial Landscapes"

    fhalab/alde4ssmula’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Oct 26, 2024
  • LevSeq_VDB Public
    fhalab/LevSeq_VDB’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 20, 2024
  • evSeq Public

    Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.

    fhalab/evSeq’s past year of commit activity
    Python 32 9 6 0 Updated Jun 1, 2022
  • MLDE Public

    A machine-learning package for navigating combinatorial protein fitness landscapes.

    fhalab/MLDE’s past year of commit activity
    Python 122 26 3 1 Updated Nov 17, 2021
  • SPGen Public
    fhalab/SPGen’s past year of commit activity
    Jupyter Notebook 19 MIT 4 2 0 Updated Mar 31, 2021
  • embeddings_reproduction Public
    fhalab/embeddings_reproduction’s past year of commit activity
    Jupyter Notebook 127 32 6 0 Updated Feb 16, 2021
  • channels Public

    Gaussian process models for optimizing channelrhodopsin properties.

    fhalab/channels’s past year of commit activity
    Jupyter Notebook 11 14 2 0 Updated May 30, 2020
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