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Write an OPM tutorial for CuttingEEG X #798

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robertoostenveld opened this issue Jul 22, 2024 · 5 comments
Open

Write an OPM tutorial for CuttingEEG X #798

robertoostenveld opened this issue Jul 22, 2024 · 5 comments

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@robertoostenveld
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I discussed with @contsili that for the CuttingEEG X at the Donders we want to make a mash up of the existing OPM tutorials.

The plan is something like this, although Konstantinos might remember it slightly differently:

  • do a quick ERF analysis of SQUID MEG, show normal multiplot+topoplot
  • make ft_plot_topo3d figure at specific latency (for later comparison) together with head surface from coregistered MRI
  • process multiple runs of OPM data
  • timelockanalysis, appendtimelock, multiplot+topoplot
  • explain artifact rejection per run, repeat over runs and again work towards appended topoplot
  • append the raw data, inserting nans for the missing channels in each run
  • show block-wise matrix rejectvisual, explain that spatial and temporal information does not allow for overall ICA or HFC
  • explain that simultaneous measurement of all (or many) channels gives more options for denoising (artifact removal)
  • explain artifact removal per run, repeat over runs and again work towards appended
  • coregistration with anatomical MRI
  • make ft_plot_topo3d figure from OPM ERF at specific latency together with head surface from coregistered MRI
robertoostenveld added a commit that referenced this issue Jul 22, 2024
@robertoostenveld
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I added "cuttingeegx" to the workshop overview page, made a landing page, and added a placeholder for the actual tutorial.

@contsili
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I opened a PR and I started working on the tutorial. See #813

@contsili
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@robertoostenveld We still need to discuss how to make this workshop a main FT tutorial.

@robertoostenveld
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let's do that in person

@contsili
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contsili commented Nov 15, 2024

After discussing with @robertoostenveld, I'll reformat the workshop into a tutorial page:

  • Focus more on OPMs.
  • Present both SQUID and OPM analysis code for each step, rather than all the SQUID analysis first and then all the OPMs analysis.
  • Update the flow chart based on the FT design (@robertoostenveld please give me access to the ppt template).
  • We still need to determine the granularity of the ToC.

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