Generates a table of the annotated genes for mouse genome (GRCm39) from the ensembl database. Using the R-packages biomaRt
to pull gene data. Table consists of 10 columns:
chr
Chromosome ID.start
Gene start.end
Gene end.strand
Strand info, given in+
,-
or*
forward, reverse or no info, respectively.gene_id
Ensembl gene IDgene_name
External gene nameentrez_id
Entrez IDgene_info
Gene discriptiongene_type
Protein coding, non-coding RNA, pseudogene etcgene_type2
A concatination of the gene types where the micro RNAs are label ncRNA and all pseudogene variants are labeled pseudogenes