BamToFastq (0.1-420-g3536bb0)
Converts a coordinate-sorted BAM file to FASTQ files (paired-end only).
Mandatory parameters:
-in <file> Input BAM file.
-out1 <file> Read 1 output FASTQ.GZ file.
-out2 <file> Read 2 output FASTQ.GZ file.
Special parameters:
--help Shows this help and exits.
--version Prints version and exits.
--changelog Prints changeloge and exits.
--tdx Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
BamToFastq 0.1-420-g3536bb0