FastqExtractBarcode.md

FastqExtractBarcode tool help

FastqExtractBarcode (0.1-420-g3536bb0)

Cuts bases from the beginning of reads and stores them in an additional fastq.

Mandatory parameters:
  -in <file>          input fastq file1.
  -out_main <string>  output filename for main fastq.

Optional parameters:
  -cut <int>          number of bases from the beginning of reads to use as barcodes.
                      Default value: '0'
  -out_index <string> output filename for index fastq.
                      Default value: 'index.fastq.gz'

Special parameters:
  --help              Shows this help and exits.
  --version           Prints version and exits.
  --changelog         Prints changeloge and exits.
  --tdx               Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

FastqExtractBarcode changelog

FastqExtractBarcode 0.1-420-g3536bb0

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