FastqTrim (0.1-461-ga421898)
Trims start/end bases from all reads in a FASTQ file.
Mandatory parameters:
-in <file> Input gzipped FASTQ file.
-out <file> Output gzipped FASTQ file.
Optional parameters:
-start <int> Trim this number of bases from the start of the read.
Default value: '0'
-end <int> Trim this number of bases from the end of the read.
Default value: '0'
-len <int> Restrict read length to this value (after trimming from start/end).
Default value: '0'
Special parameters:
--help Shows this help and exits.
--version Prints version and exits.
--changelog Prints changeloge and exits.
--tdx Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.
FastqTrim 0.1-461-ga421898
2016-08-26 Added 'len' parameter.