Skip to content

Latest commit

 

History

History
28 lines (22 loc) · 982 Bytes

FastqTrim.md

File metadata and controls

28 lines (22 loc) · 982 Bytes
Raw

FastqTrim tool help

FastqTrim (0.1-461-ga421898)

Trims start/end bases from all reads in a FASTQ file.

Mandatory parameters:
  -in <file>   Input gzipped FASTQ file.
  -out <file>  Output gzipped FASTQ file.

Optional parameters:
  -start <int> Trim this number of bases from the start of the read.
               Default value: '0'
  -end <int>   Trim this number of bases from the end of the read.
               Default value: '0'
  -len <int>   Restrict read length to this value (after trimming from start/end).
               Default value: '0'

Special parameters:
  --help       Shows this help and exits.
  --version    Prints version and exits.
  --changelog  Prints changeloge and exits.
  --tdx        Writes a Tool Definition Xml file. The file name is the application name with the suffix '.tdx'.

FastqTrim changelog

FastqTrim 0.1-461-ga421898

2016-08-26 Added 'len' parameter.

back to ngs-bits