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@fls-bioinformatics-core

Bioinformatics Core Facility in the Faculty of Biology Medicine and Health at the University of Manchester

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  1. auto_process_ngs auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    Python 9 7

  2. pegs pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    Python 2 1

  3. genomics genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    Python 81 37

  4. RnaChipIntegrator RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify th…

    Python 5 1

Repositories

Showing 10 of 17 repositories
  • auto_process_ngs Public

    Scripts and utilities for automatic processing & management of Illumina NGS sequencing data.

    fls-bioinformatics-core/auto_process_ngs’s past year of commit activity
    Python 9 7 67 1 Updated Sep 12, 2024
  • RnaChipIntegrator Public

    RnaChipIntegrator is a utility that performs integrated analyses of 'gene' data (a set of genes or other genomic features) with 'peak' data (a set of regions, for example ChIP peaks) to identify the genes nearest to each peak, and vice versa

    fls-bioinformatics-core/RnaChipIntegrator’s past year of commit activity
    Python 5 Artistic-2.0 1 4 0 Updated Sep 4, 2024
  • galaxy-tools Public

    FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.

    fls-bioinformatics-core/galaxy-tools’s past year of commit activity
    Shell 14 11 3 4 Updated Mar 20, 2024
  • genomics Public

    Scripts, utilities and programs for genomic bioinformatics.

    fls-bioinformatics-core/genomics’s past year of commit activity
    Python 81 37 8 0 Updated Feb 16, 2024
  • pegs Public

    PEGS: Peak-set Enrichment of Gene-Sets

    fls-bioinformatics-core/pegs’s past year of commit activity
    Python 2 BSD-3-Clause 1 1 0 Updated Dec 7, 2023
  • NanoDam_analysis-sge Public Forked from AHBrand-Lab/NanoDam_analysis

    R markdowns & scripts accompanying 'Tang, J et al., 2021, bioRxiv'.

    fls-bioinformatics-core/NanoDam_analysis-sge’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Nov 27, 2023
  • fls-bioinformatics-core.github.io Public
    fls-bioinformatics-core/fls-bioinformatics-core.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 26, 2022
  • GFFUtils Public

    Python module and utility programs for working with GFF files

    fls-bioinformatics-core/GFFUtils’s past year of commit activity
    Python 31 3 7 1 Updated Nov 25, 2020
  • SCRUM_single_cell_bioinformatics_workshop Public

    This is a workshop to show step-by-step workflow of Single cell RNA-seq analysis

    fls-bioinformatics-core/SCRUM_single_cell_bioinformatics_workshop’s past year of commit activity
    HTML 2 1 0 0 Updated Mar 3, 2020
  • HTS_SOLiD_Preprocessing Public

    Archive of the SOLiD preprocessing scripts by Ariella Sasson & Todd Michael originally hosted at http://hts.rutgers.edu/filter

    fls-bioinformatics-core/HTS_SOLiD_Preprocessing’s past year of commit activity
    Perl 1 GPL-3.0 1 0 0 Updated Oct 19, 2015
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