Add legacyQLF argument to runEISA (pass to edgeR::glmQLFit) #39
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## devel #39 +/- ##
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Coverage 98.57% 98.57%
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Files 6 6
Lines 421 421
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Hits 415 415
Misses 6 6 ☔ View full report in Codecov by Sentry. |
mbstadler
approved these changes
Jan 8, 2024
|
Merged and pushed upstream :-) |
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edgeR4.1.5 made the 'new' QLF pipeline introduced inedgeR4.0.0 the default, which changes the results ofglmQLFit()a bit and breaks some of theeisaRtests. This PR adds an argument torunEISA()to allow the user to choose between the new and legacy methods (the argument will be passed toglmQLFit()), and keeps the legacy approach for the unit tests.