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Releases: fmicompbio/ez_zarr

v0.3.2

22 Aug 15:20
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v0.3.2 Pre-release
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What's Changed

  • Remove create_name_plate_A1 (always use create_name_plate_A01 for empty wells)
  • get names from .zattr for non-empty wells

Full Changelog: v0.3.1...v0.3.2

v0.3.0

v0.2.3

05 Aug 12:12
3fadeef
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v0.2.3 Pre-release
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Full Changelog: v0.2.2...v0.2.3

v0.2.2

19 Jul 05:39
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v0.2.2 Pre-release
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What's new

  • Add ome_zarr.ImageList class to represent a set of ome_zarr.Image objects
  • Add ome_zarr.import_Fractal_plate helper function that creates an ome_zarr.ImageList from a Fractal output with fully configured plate layout
  • Minor fixes and improvements

Full Changelog: v0.2.1...v0.2.2

v0.2.1

06 Jun 15:54
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v0.2.1 Pre-release
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What's new

  • minor fixes
  • add plotting.plot_image(..., restrict_to_label_values) argument, allowing to mask out regions outside of the selected label

Full Changelog: v0.2.0...v0.2.1

v0.2.0

31 May 06:46
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v0.2.0 Pre-release
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What's new

Much of the issues described in #9, including:

  • move some helper functions to new module utils
  • create new module ome_zarr
  • add new class ome_zarr.Image to represent a single image
    (implements most of the well-level functionality in hcs_wrappers.plate,
    and in addition adds a few new tricks, like automated scaling of intensity
    and label arrays)
  • mark hcs_wrappers classes as "legacy" in the documentation

Full Changelog: v0.1.5...v0.2.0

v0.1.5

09 Feb 13:00
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v0.1.5 Pre-release
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What's Changed

  • add pyramid_level_coord argument to plot_well() by @silvbarb in #5
  • add scalebar_label argument to plot_well() and plot_image()
  • update quickstart.qmd to use the new plotting features

Full Changelog: v0.1.4...v0.1.5

v0.1.4

08 Feb 17:42
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v0.1.4 Pre-release
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What's new

  • add pyramid_level_coord parameter to get_image_ROI() and get_label_ROI(), allowing to extract by coordinates that refer to another pyramid_level than the one the image data is being extracted from.

Full Changelog: v0.1.3...v0.1.4

v0.1.3

08 Feb 16:12
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v0.1.3 Pre-release
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What's Changed

  • Add plotting functionality (for example plot_plate() and plot_well methods for FractalZarr and plot_image() for any image arrays)
  • See all changes in #4

Full Changelog: v0.1.2...v0.1.3

v0.1.2

30 Jan 16:36
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v0.1.2 Pre-release
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What's Changed

  • minor updates to documentation
  • add package deployment of tagged pushes to pypi.org

Full Changelog: v0.1.1...v0.1.2