docs(Reference): added ref to application preprint paper

frankkramer-lab · Oct 21, 2022 · e867b34 · e867b34
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diff --git a/CITATION.cff b/CITATION.cff
@@ -9,8 +9,6 @@ authors:
   orcid: "https://orcid.org/0000-0002-7825-5738"
 - family-names: "Hartmann"
   given-names: "Dennis"
-- family-names: "Meyer"
-  given-names: "Philip"
 - family-names: "Schneider"
   given-names: "Pia"
 - family-names: "Soto-Rey"
@@ -20,7 +18,7 @@ authors:
   given-names: "Frank"
   orcid: "https://orcid.org/0000-0002-2857-7122"
 title: "AUCMEDI: a framework for Automated Classification of Medical Images"
-version: 1.0.0
+version: X.Y.Z
 doi: 10.5281/zenodo.6633540
 date-released: 2022-06-01
 url: "https://github.com/frankkramer-lab/aucmedi"
diff --git a/README.md b/README.md
@@ -111,18 +111,26 @@ preds = model.predict(test_gen)
 AUCMEDI is currently unpublished. But coming soon!
 
 In the meantime:  
-Please cite our base framework MIScnn as well as the AUCMEDI GitHub repository:
+Please cite our application manuscript as well as the AUCMEDI GitHub repository:
 
 ```
-Müller, D., Kramer, F. MIScnn: a framework for medical image segmentation with
-convolutional neural networks and deep learning. BMC Med Imaging 21, 12 (2021).
-https://doi.org/10.1186/s12880-020-00543-7
+Mayer, S., Müller, D., & Kramer F. (2022). Standardized Medical Image Classification
+across Medical Disciplines. [Preprint] https://arxiv.org/abs/2210.11091.
+
+@article{AUCMEDIapplicationMUELLER2022,
+  title={Standardized Medical Image Classification across Medical Disciplines},
+  author={Simone Mayer, Dominik Müller, Frank Kramer},
+  year={2022}
+  eprint={2210.11091},
+  archivePrefix={arXiv},
+  primaryClass={cs.CV}
+}
 ```
 
 ```
-Müller, D., Mayer, S., Hartmann, D., Meyer, P., Schneider, P., Soto-Rey, I., & Kramer, F. (2022).
+Müller, D., Mayer, S., Hartmann, D., Schneider, P., Soto-Rey, I., & Kramer, F. (2022).
 AUCMEDI: a framework for Automated Classification of Medical Images (Version X.Y.Z) [Computer software].
-GitHub repository. https://github.com/frankkramer-lab/aucmedi
+https://doi.org/10.5281/zenodo.6633540. GitHub repository. https://github.com/frankkramer-lab/aucmedi
 ```
 
 Thank you for citing our work.

diff --git a/docs/getstarted/cite.md b/docs/getstarted/cite.md
@@ -1,19 +1,29 @@
 AUCMEDI is currently unpublished. But coming soon!
 
-Please cite our base framework MIScnn as well as the AUCMEDI GitHub repository:
+In the meantime:  
+Please cite our application manuscript as well as the AUCMEDI GitHub repository:
 
 ```
-Müller, D., Kramer, F. MIScnn: a framework for medical image segmentation with
-convolutional neural networks and deep learning. BMC Med Imaging 21, 12 (2021).
-https://doi.org/10.1186/s12880-020-00543-7
+Mayer, S., Müller, D., & Kramer F. (2022). Standardized Medical Image Classification
+across Medical Disciplines. [Preprint] https://arxiv.org/abs/2210.11091.
+
+@article{AUCMEDIapplicationMUELLER2022,
+  title={Standardized Medical Image Classification across Medical Disciplines},
+  author={Simone Mayer, Dominik Müller, Frank Kramer},
+  year={2022}
+  eprint={2210.11091},
+  archivePrefix={arXiv},
+  primaryClass={cs.CV}
+}
 ```
 
 ```
-Müller, D., Mayer, S., Hartmann, D., Meyer, P., Schneider, P., Soto-Rey, I., & Kramer, F. (2022).
-AUCMEDI: a framework for Automated Classification of Medical Images (Version 1.0.0) [Computer software].
-GitHub repository. https://github.com/frankkramer-lab/aucmedi
+Müller, D., Mayer, S., Hartmann, D., Schneider, P., Soto-Rey, I., & Kramer, F. (2022).
+AUCMEDI: a framework for Automated Classification of Medical Images (Version X.Y.Z) [Computer software].
+https://doi.org/10.5281/zenodo.6633540. GitHub repository. https://github.com/frankkramer-lab/aucmedi
 ```
 
+
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 **CITATION.cff of the AUCMEDI GitHub repository:**