utils directory is moved to sniffles/

utils is a common name for a directory so it could be the case another applications has same directory and I am not sure what conda is going to do. edlib and psutil have been moved to required dependencies
fritzsedlazeck · Apr 10, 2024 · 2cdffd4 · 2cdffd4
1 parent 7afd19d
commit 2cdffd4
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Showing 4 changed files with 3 additions and 10 deletions.
diff --git a/setup.cfg b/setup.cfg
@@ -21,17 +21,10 @@ packages = find:
 python_requires = >=3.10
 install_requires:
     pysam>=0.21.0
-scripts:
-    src/sniffles/sniffles
-
-[options.extras_require]
-align =
-    edlib>=1.3.9
-mem =
-    psutil>=5.9.4
-all =
     edlib>=1.3.9
     psutil>=5.9.4
+scripts:
+    src/sniffles/sniffles
 
 [options.packages.find]
 where = src
diff --git a/src/sniffles/sniffles b/src/sniffles/sniffles
@@ -12,7 +12,7 @@ import logging
 import logging.config
 from typing import Optional
 
-from utils.resmon import ResourceMonitor
+from sniffles.utils.resmon import ResourceMonitor
 
 DEV_MONITOR_MEM = False
 

diff --git a/src/utils/__init__.py → src/sniffles/utils/__init__.py b/src/utils/__init__.py → src/sniffles/utils/__init__.py
diff --git a/src/utils/resmon.py → src/sniffles/utils/resmon.py b/src/utils/resmon.py → src/sniffles/utils/resmon.py