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Add features from cellmap fork #4

Merged
merged 31 commits into from
Mar 27, 2024
Merged

Add features from cellmap fork #4

merged 31 commits into from
Mar 27, 2024

Commits on Aug 26, 2023

  1. feat: multiscale ome-zarr reading compatability

    @rhoadesScholar
    rhoadesScholar committed Aug 26, 2023
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Commits on Aug 30, 2023

  1. feat: add windows os support

    @rhoadesScholar
    rhoadesScholar committed Aug 30, 2023
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Commits on Sep 1, 2023

  1. bugfix: access_parent for ngff multiscale datasets

    @rhoadesScholar
    rhoadesScholar committed Sep 1, 2023
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Commits on Sep 14, 2023

  1. bugfix: handle non-ngff multiscale

    @rhoadesScholar
    rhoadesScholar committed Sep 14, 2023
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Commits on Jan 4, 2024

  1. fixed multi-scale zarr without parent group

    @rhoadesScholar
    rhoadesScholar committed Jan 4, 2024
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Commits on Jan 16, 2024

  1. Merge branch 'main' into ome-zarr-reading

    @rhoadesScholar
    rhoadesScholar authored Jan 16, 2024
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  2. Black format.

    @rhoadesScholar
    rhoadesScholar committed Jan 16, 2024
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  3. fix: 🐛 Typing

    @rhoadesScholar
    rhoadesScholar committed Jan 16, 2024
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  4. fx_bug: get parent path instead of folder name

    @mzouink
    mzouink committed Jan 16, 2024
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Commits on Jan 21, 2024

  1. fix: ⚡️ Use PyPi prebuilt binary: psycopg2-binary instead of building… 

    … from source.
    @rhoadesScholar
    rhoadesScholar committed Jan 21, 2024
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Commits on Feb 7, 2024

  1. Merge pull request #1 from janelia-cellmap/ome-zarr-reading 

    Ome zarr reading
    @rhoadesScholar
    rhoadesScholar authored Feb 7, 2024
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Commits on Feb 14, 2024

  1. Modified _read_voxel_size_offset to read voxel_size and offset from .… 

    …zarr and .n5 stores
    @yuriyzubov
    yuriyzubov committed Feb 14, 2024
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Commits on Feb 16, 2024

  1. modified _read_voxel_size_offset to read attributes from .n5 and .zar… 

    …r containers
    @yuriyzubov
    yuriyzubov committed Feb 16, 2024
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  2. Added unit tests for funlib.persistence.datasets

    @yuriyzubov
    yuriyzubov committed Feb 16, 2024
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  3. Added unit tests for funlib.persistence.arrays.datasets

    @yuriyzubov
    yuriyzubov committed Feb 16, 2024
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Commits on Feb 20, 2024

  1. Fix: argument issue in open_ds function

    @yuriyzubov
    yuriyzubov committed Feb 20, 2024
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Commits on Feb 27, 2024

  1. added generation of multiscales metadata when creating a zarr array w… 

    …ith prepare_ds()
    @yuriyzubov
    yuriyzubov committed Feb 27, 2024
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  2. Add multiscales_metadata flag

    @yuriyzubov
    yuriyzubov committed Feb 27, 2024
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  3. Fix: check if multiscales is present

    @yuriyzubov
    yuriyzubov committed Feb 27, 2024
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Commits on Feb 29, 2024

  1. Merge pull request #2 from janelia-cellmap/read_metadata 

    Read voxel size, offset, and units from metadata for an input array.
    @rhoadesScholar
    rhoadesScholar authored Feb 29, 2024
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Commits on Mar 10, 2024

  1. Added checking for legacy attributes in zarr metadata

    @yuriyzubov
    yuriyzubov committed Mar 10, 2024
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Commits on Mar 19, 2024

  1. Merge pull request #3 from janelia-cellmap/read_metadata 

    Added checking for legacy attributes in zarr metadata
    @rhoadesScholar
    rhoadesScholar authored Mar 19, 2024
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  2. Merge branch 'funkelab:main' into main

    @rhoadesScholar
    rhoadesScholar authored Mar 19, 2024
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  3. fix: 🐛 Fix n5, multiscale and single scale zarr loading

    @rhoadesScholar
    rhoadesScholar committed Mar 19, 2024
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  4. style: 🎨 Black format.

    @rhoadesScholar
    rhoadesScholar committed Mar 19, 2024
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Commits on Mar 26, 2024

  1. Fix offset, voxel size order issue for an array with n5 store

    @yuriyzubov
    yuriyzubov committed Mar 26, 2024
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  2. Fix offset, voxel size order issue for an N5 store array

    @yuriyzubov
    yuriyzubov committed Mar 26, 2024
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  3. Fix: Black format

    @yuriyzubov
    yuriyzubov committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. Fixing the order of attributes check for .n5 array

    @yuriyzubov
    yuriyzubov committed Mar 27, 2024
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  2. mypy type annotation

    @yuriyzubov
    yuriyzubov committed Mar 27, 2024
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  3. test: ✨ Fix mypy errors.

    @rhoadesScholar
    rhoadesScholar committed Mar 27, 2024
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