getting package name from package

furrer-lab · Jul 18, 2024 · 9c4738b · 9c4738b
1 parent adda297
commit 9c4738b
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Showing 3 changed files with 6 additions and 2 deletions.
diff --git a/containers/debian/Dockerfile b/containers/debian/Dockerfile
@@ -89,4 +89,5 @@ WORKDIR target/
 # Get the package name based on the repository from the Description file
 RUN PACKAGE_NAME=$(R -s -e "package<-desc::desc(file=file.path('${PACKAGE_PATH}','DESCRIPTION'))\$get_field('Package');writeLines(package)")
 # Install all dependencies of PACKAGE_NAME but not the package it self
-RUN R -e "renv::deactivate();pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs) & !(pckgs == '$PACKAGE_NAME')])"
+RUN R -e "renv::deactivate()"
+RUN R -e "package<-desc::desc(package='$PACKAGE_PATH')\$get_field('Package');pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs) & !(pckgs == package)])"
diff --git a/containers/fedora/Dockerfile b/containers/fedora/Dockerfile
@@ -107,4 +107,5 @@ WORKDIR target/
 # Get the package name based on the repository from the Description file
 RUN PACKAGE_NAME=$(R -s -e "package<-desc::desc(file=file.path('${PACKAGE_PATH}','DESCRIPTION'))\$get_field('Package');writeLines(package)")
 # Install all dependencies of PACKAGE_NAME but not the package it self
-RUN R -e "renv::deactivate();pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs) & !(pckgs == '$PACKAGE_NAME')])"
+RUN R -e "renv::deactivate()"
+RUN R -e "package<-desc::desc(package='$PACKAGE_PATH')\$get_field('Package');pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs) & !(pckgs == package)])"
diff --git a/containers/valgrind/Dockerfile b/containers/valgrind/Dockerfile
@@ -121,3 +121,5 @@ WORKDIR target/
 # get a list of all dependencies; install remaining packages
 # escape=\
 RUN R -e "renv::deactivate();pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs)])"
+RUN R -e "renv::deactivate()"
+RUN R -e "package<-desc::desc(package='$PACKAGE_PATH')\$get_field('Package');pckgs<-unique(renv::dependencies('$PACKAGE_PATH')[,'Package']);pres_pckgs<-installed.packages()[,'Package'];install.packages(pckgs[!(pckgs %in% pres_pckgs) & !(pckgs == package)])"