adding facial skeleton terms

issue #151

adding: lacrimal bone length
nasal bone length to nasomaxillary suture
facial skeleton lateral length to infra-orbital foramen of maxilla
facial skeleton lateral length to frontolacrimal suture

src/ontology/fovt-edit.owl

@@ -1153,6 +1153,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000110>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000111>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000112>))
 Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000113>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000114>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000115>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000116>))
+Declaration(Class(<http://purl.obolibrary.org/obo/FOVT_2000117>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_91561>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9788>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_9845>))
@@ -13472,6 +13476,57 @@ AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#has
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOVT_2000113> "facial skeleton breadth at nasal bone"@en)
 SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000113> <http://purl.obolibrary.org/obo/FOVT_2000021>)
 
+# Class: <http://purl.obolibrary.org/obo/FOVT_2000114> (lacrimal bone length)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/FOVT_2000114> <http://purl.obolibrary.org/obo/IAO_0000423>)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FOVT_2000114> "The length of a lacrimal bone along the anterior-posterior axis."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/oba#measured_in_taxon> <http://purl.obolibrary.org/obo/FOVT_2000114> <http://purl.obolibrary.org/obo/NCBITaxon_9922>)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/oba#measured_in_taxon> <http://purl.obolibrary.org/obo/FOVT_2000114> <http://purl.obolibrary.org/obo/NCBITaxon_9935>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/FOVT_2000114> "https://orcid.org/0000-0001-8415-4848")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/FOVT_2000114> "greatest length of lacrimal"@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") rdfs:comment <http://purl.obolibrary.org/obo/FOVT_2000114> "The following is the measurement number and genus for this trait in von den Driesch (1979): 14 Ovis and Capra"@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") rdfs:comment <http://purl.obolibrary.org/obo/FOVT_2000114> "This measurement is taken from the most lateral point of the lacrimal bone to the most oral point of the lacrimomaxillary suture."@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOVT_2000114> "lacrimal bone length"@en)
+EquivalentClasses(<http://purl.obolibrary.org/obo/FOVT_2000114> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000122> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/UBERON_0001680>)))
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000114> <http://purl.obolibrary.org/obo/OBA_0002546>)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000114> <http://purl.obolibrary.org/obo/OBA_VT0005271>)
+
+# Class: <http://purl.obolibrary.org/obo/FOVT_2000115> (nasal bone length to nasomaxillary suture)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/FOVT_2000115> <http://purl.obolibrary.org/obo/IAO_0000423>)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FOVT_2000115> "The length of a nasal bone from a nasion to a midsagittal point of anteriormost points of nasomaxillary suture."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/oba#measured_in_taxon> <http://purl.obolibrary.org/obo/FOVT_2000115> <http://purl.obolibrary.org/obo/NCBITaxon_9822>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/FOVT_2000115> "https://orcid.org/0000-0001-8415-4848")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/FOVT_2000115> "short nasal length"@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:9780873659505"^^xsd:decimal) rdfs:comment <http://purl.obolibrary.org/obo/FOVT_2000115> "The following is the measurement number and genus for this trait in von den Driesch (1979): 15a Sus"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOVT_2000115> "nasal bone length to nasomaxillary suture"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000115> <http://purl.obolibrary.org/obo/OBA_0002399>)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000115> <http://purl.obolibrary.org/obo/OBA_0002546>)
+
+# Class: <http://purl.obolibrary.org/obo/FOVT_2000116> (facial skeleton lateral length to infra-orbital foramen of maxilla)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/FOVT_2000116> <http://purl.obolibrary.org/obo/IAO_0000423>)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FOVT_2000116> "The length of a facial skeleton from a entorbitale to an infra-orbital foramen of maxilla."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/oba#measured_in_taxon> <http://purl.obolibrary.org/obo/FOVT_2000116> <http://purl.obolibrary.org/obo/NCBITaxon_9822>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/FOVT_2000116> "https://orcid.org/0000-0001-8415-4848")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/FOVT_2000116> "entorbitale to infraorbitale"@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") rdfs:comment <http://purl.obolibrary.org/obo/FOVT_2000116> "The following is the measurement number and genus for this trait in von den Driesch (1979): 19 Sus."@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOVT_2000116> "facial skeleton lateral length to infra-orbital foramen of maxilla"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000116> <http://purl.obolibrary.org/obo/FOVT_2000094>)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000116> <http://purl.obolibrary.org/obo/OBA_0002546>)
+
+# Class: <http://purl.obolibrary.org/obo/FOVT_2000117> (facial skeleton lateral length to frontolacrimal suture)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/FOVT_2000117> <http://purl.obolibrary.org/obo/IAO_0000423>)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FOVT_2000117> "The lenght of a facial skeleton from a posteriormost point of a lacrimal bone at the margin of orbit of skull to a posteriormost point of a frontolacrimal suture."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/oba#measured_in_taxon> <http://purl.obolibrary.org/obo/FOVT_2000117> <http://purl.obolibrary.org/obo/NCBITaxon_9822>)
+AnnotationAssertion(dcterms:contributor <http://purl.obolibrary.org/obo/FOVT_2000117> "https://orcid.org/0000-0001-8415-4848")
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/FOVT_2000117> "upper length of the lacrimal"@en)
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN: 9780873659505") rdfs:comment <http://purl.obolibrary.org/obo/FOVT_2000117> "The following is the measurement number and genus for this trait in von den Driesch (1979): 21 Sus"@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FOVT_2000117> "facial skeleton lateral length to frontolacrimal suture"@en)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000117> <http://purl.obolibrary.org/obo/FOVT_2000094>)
+SubClassOf(<http://purl.obolibrary.org/obo/FOVT_2000117> <http://purl.obolibrary.org/obo/OBA_0002546>)
+
 # Class: <http://purl.obolibrary.org/obo/OBA_0002413> (pelvic girdle bone/zone size)
 
 SubClassOf(<http://purl.obolibrary.org/obo/OBA_0002413> <http://purl.obolibrary.org/obo/OBA_0002413>)

src/ontology/imports/bco_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/bco_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/bco_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/bco_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/bco/releases/2021-11-14/bco.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BCO_0000003>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BCO_0000046>))

src/ontology/imports/bfo_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/bfo_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/bfo_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/bfo_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000117>))

src/ontology/imports/bspo_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/bspo_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/bspo_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/bspo_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/bspo/releases/2023-05-27/bspo.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

src/ontology/imports/iao_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/iao_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/iao_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/iao_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/iao/2022-11-07/iao.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000001>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))

src/ontology/imports/ncbitaxon_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/ncbitaxon_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/ncbitaxon_import.owl>
-Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ncbitaxon/releases/2023-06-20/subsets/taxslim.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/ncbitaxon_import.owl>
+Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ncbitaxon/releases/2023-09-14/subsets/taxslim.owl>)
+Annotation(owl:versionInfo "2023-09-14")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_1>))
 Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_117570>))
@@ -148,6 +148,8 @@ AnnotationAssertion(rdfs:label <http://www.geneontology.org/formats/oboInOwl#has
 # Class: <http://purl.obolibrary.org/obo/NCBITaxon_1> (root)
 
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "GC_ID:1")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "PMID:30365038")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/NCBITaxon_1> "PMID:32761142")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/NCBITaxon_1> "ncbi_taxonomy")
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/ncbitaxon#synonym>) <http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym> <http://purl.obolibrary.org/obo/NCBITaxon_1> "all")
 AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/NCBITaxon_1> "NCBITaxon:1")

src/ontology/imports/oba_import.owl

@@ -11,7 +11,7 @@
      xmlns:terms="http://purl.org/dc/terms/"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/fovt/imports/oba_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/oba_import.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/oba_import.owl"/>
     </owl:Ontology>
 
 
@@ -9938,6 +9938,39 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/OBA_VT0005271 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_VT0005271">
+        <owl:equivalentClass>
+            <owl:Class>
+                <owl:intersectionOf rdf:parseType="Collection">
+                    <rdf:Description rdf:about="http://purl.obolibrary.org/obo/PATO_0000051"/>
+                    <owl:Restriction>
+                        <owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/RO_0002314"/>
+                        <owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0001680"/>
+                    </owl:Restriction>
+                </owl:intersectionOf>
+            </owl:Class>
+        </owl:equivalentClass>
+        <obo:IAO_0000115>The morphology of a lacrimal bone.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym>morphology of lacrimal bone</oboInOwl:hasExactSynonym>
+        <rdfs:label>lacrimal bone morphology trait</rdfs:label>
+    </owl:Class>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_VT0005271"/>
+        <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
+        <owl:annotatedTarget>The morphology of a lacrimal bone.</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>obo:oba/patterns/entity_attribute_part_of</oboInOwl:hasDbXref>
+    </owl:Axiom>
+    <owl:Axiom>
+        <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/OBA_VT0005271"/>
+        <owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/>
+        <owl:annotatedTarget>morphology of lacrimal bone</owl:annotatedTarget>
+        <oboInOwl:hasDbXref>obo:oba/patterns/entity_attribute_part_of</oboInOwl:hasDbXref>
+    </owl:Axiom>
+
+
+
     <!-- http://purl.obolibrary.org/obo/OBA_VT0005273 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/OBA_VT0005273">
@@ -11630,6 +11663,12 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/UBERON_0001680 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001680"/>
+
+
+
     <!-- http://purl.obolibrary.org/obo/UBERON_0001681 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0001681"/>

src/ontology/imports/oba_terms.txt

@@ -105,4 +105,5 @@ OBA:VT0003047 #thoracic vertebra morphology trait
 OBA:0004048 #lumbar vertebra length
 OBA:0002828 #lumbar vertebra 5 size
 OBA:0002399 #nasal bone length
-OBA:0003446 #premaxilla length
+OBA:0003446 #premaxilla length
+OBA:VT0005271 #lacrimal bone morphology trait

src/ontology/imports/pato_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/pato_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/pato_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/pato_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/pato/releases/2023-05-18/pato.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

src/ontology/imports/ro_import.owl

@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/fovt/imports/ro_import.owl>
-<http://purl.obolibrary.org/obo/fovt/releases/2023-09-13/imports/ro_import.owl>
+<http://purl.obolibrary.org/obo/fovt/releases/2023-09-14/imports/ro_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2023-08-18/ro.owl>)
-Annotation(owl:versionInfo "2023-09-13"^^xsd:string)
+Annotation(owl:versionInfo "2023-09-14"^^xsd:string)
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))