GHA: Enable R hub #137
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| on: [push, pull_request] | |
| name: revdepcheck-top | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| timeout-minutes: 30 | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.config.pkg }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { r: "release", pkg: "cSEM" } | |
| - { r: "release", pkg: "dipsaus" } | |
| - { r: "release", pkg: "EFAtools" } | |
| # - { r: "release", pkg: "EGAnet" } ## libglpk.so missing | |
| # - { r: "release", pkg: "elevatr" } ## libproj.so missing | |
| - { r: "release", pkg: "fabletools" } | |
| - { r: "release", pkg: "fxTWAPLS" } | |
| # - { r: "release", pkg: "lava" } ## req's Bioc pkgs | |
| # - { r: "release", pkg: "nflfastR" } | |
| # - { r: "release", pkg: "poppr" } ## fails to install | |
| # - { r: "release", pkg: "Seurat" } | |
| - { r: "release", pkg: "SimDesign" } | |
| # - { r: "release", pkg: "tidySEM" } ## fails to install | |
| - { r: "release", pkg: "tsdistributions" } | |
| - { r: "release", pkg: "tsgarch" } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_CRAN_INCOMING_: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| run: sudo apt-get install -y tidy | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::remotes | |
| any::sessioninfo | |
| any::covr | |
| needs: check | |
| - name: Install dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| install.packages(".", repos=NULL, type="source") | |
| install.packages("${{ matrix.config.pkg }}", dependencies=TRUE) | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check reverse dependency package | |
| run: | | |
| url=$(Rscript -e "cat(remotes:::download_version_url('${{ matrix.config.pkg }}', version=NULL, repos='https://cloud.r-project.org', type='source'))") | |
| wget "$url" | |
| R_PROGRESSR_ENABLE=true | |
| R CMD check --no-manual --as-cran "$(basename "$url")" | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-revdep${{ matrix.config.pkg }}-results | |
| path: ${{ matrix.config.pkg }}.Rcheck |