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Update variation property to account for multiple alleles #58

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Update variation property to account for multiple alleles #58

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b1fdde8
Update variation property to account for multiple alleles
daisieh Feb 23, 2023
e45af95
Update defaultSchema.json
daisieh Feb 24, 2023
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33 changes: 21 additions & 12 deletions models/json/beacon-v2-default-model/genomicVariations/defaultSchema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -99,6 +99,14 @@
"id": "GENO:0000136",
"label": "homozygous"
},
{
"id": "GENO:0000458",
"label": "simple heterozygous"
},
{
"id": "GENO:0000402",
"label": "compound heterozygous"
},
{
"id": "GENO:0000604",
"label": "hemizygous X-linked"
Expand Down Expand Up @@ -555,17 +563,18 @@
"$ref": "#/definitions/VariantLevelData"
},
"variation": {
"oneOf": [
{
"$ref": "https://raw.githubusercontent.com/ga4gh/vrs/1.2/schema/vrs.json#/definitions/MolecularVariation"
},
{
"$ref": "https://raw.githubusercontent.com/ga4gh/vrs/1.2/schema/vrs.json#/definitions/SystemicVariation"
},
{
"$ref": "#/definitions/LegacyVariation"
}
]
"type": "array",
"description": "An array of variations, starting with the reference allele and then the alternate alleles. Alleles can be referenced by their index in the array."
"items": {
"oneOf": [
{
"$ref": "https://raw.githubusercontent.com/ga4gh/vrs/1.2/schema/vrs.json#/definitions/MolecularVariation"
},
{
"$ref": "https://raw.githubusercontent.com/ga4gh/vrs/1.2/schema/vrs.json#/definitions/SystemicVariation"
}
]
}
}
},
"required": [
Expand All @@ -574,4 +583,4 @@
],
"title": "Genomic Variation",
"type": "object"
}
}