GA4GH Pedigree Tool Suite

Import formats

✓ GA4GH Pedigree ✓ PED/LINKAGE ✓ GEDCOM (Cyrillic) ✓ BOADICEA

Export formats

✓ GA4GH Pedigree ✓ PED/LINKAGE

Getting started

1. Install the tool

git clone git@github.com:GA4GH-Pedigree-Standard/pedigree-tools.git
cd nodejs/
npm install -g
cd ..

You can now use the pedigree-tools cli, for example:

2. Convert a pedigree into GA4GH pedigree format from another format

pedigree-tools import --from ped --file examples/simple.ped > test.json

3. Convert a pedigree from GA4GH pedigree format to another format

pedigree-tools export --to ped --file test.json > test.ped

It also supports streaming so the round-trip can be done in one line:

cat examples/simple.ped | pedigree-tools import --from ped --file - | pedigree-tools export --to ped --file -