Skip to content

Commit

Permalink
Merge pull request #19206 from guerler/plotly
Browse files Browse the repository at this point in the history 
Add plotly.js
  • Loading branch information
@guerler
guerler authored Nov 27, 2024
2 parents 40388b4 + 0e97596 commit 4fd6535
Show file tree
Hide file tree
Showing 7 changed files with 415 additions and 1 deletion.
12 changes: 11 additions & 1 deletion client/gulpfile.js
View file
Original file line number Diff line number Diff line change
Expand Up @@ -34,7 +34,17 @@ const STATIC_PLUGIN_BUILD_IDS = [
"tiffviewer",
"ts_visjs",
];
const INSTALL_PLUGIN_BUILD_IDS = ["cytoscape", "heatmap", "ngl", "msa", "openlayers", "phylocanvas", "venn", "vizarr"]; // todo: derive from XML
const INSTALL_PLUGIN_BUILD_IDS = [
"cytoscape",
"heatmap",
"ngl",
"msa",
"openlayers",
"phylocanvas",
"plotly",
"venn",
"vizarr",
]; // todo: derive from XML
const DIST_PLUGIN_BUILD_IDS = ["new_user"];
const PLUGIN_BUILD_IDS = Array.prototype.concat(DIST_PLUGIN_BUILD_IDS, STATIC_PLUGIN_BUILD_IDS);

Expand Down
99 changes: 99 additions & 0 deletions config/plugins/visualizations/plotly/config/plotly.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,99 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="Bar, Line and Scatter (plotly.js)">
<description>Basic Diagrams from Plotly Graphing Library.</description>
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.CSV</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<requirements>
<requirement type="npm" version="0.0.0" package="@galaxyproject/plotly"/>
</requirements>
<entry_point entry_point_type="script" src="dist/index.js" css="dist/index.css" />
<settings>
<input>
<name>stack_bar</name>
<label>Stack Bars</label>
<help>Would you like to stack bars?</help>
<type>boolean</type>
<value>false</value>
</input>
<input>
<name>stack_lines</name>
<label>Stack Lines</label>
<help>Would you like to stack lines and fill the area under the curve?</help>
<type>boolean</type>
<value>false</value>
</input>
<input>
<name>x_axis_label</name>
<label>X-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>X-axis</value>
<placeholder>Axis label</placeholder>
</input>
<input>
<name>y_axis_label</name>
<label>Y-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>Y-axis</value>
<placeholder>Axis label</placeholder>
</input>
</settings>
<tracks>
<input>
<label>Pick a series color</label>
<name>color</name>
<type>color</type>
</input>
<input>
<name>type</name>
<label>Select type</label>
<type>select</type>
<value>bar</value>
<help>Choose the chart type.</help>
<data>
<data>
<label>Bar</label>
<value>bar</value>
</data>
<data>
<label>Lines</label>
<value>lines</value>
</data>
<data>
<label>Scatter</label>
<value>scatter</value>
</data>
</data>
</input>
<input>
<label>Provide a label</label>
<name>name</name>
<type>text</type>
<placeholder>Data label</placeholder>
<value>Data label</value>
</input>
<input>
<name>x</name>
<label>Column of x-axis values</label>
<type>data_column</type>
<is_auto>true</is_auto>
</input>
<input>
<name>y</name>
<label>Column of y-axis values</label>
<type>data_column</type>
<is_number>true</is_number>
</input>
</tracks>
</visualization>
63 changes: 63 additions & 0 deletions config/plugins/visualizations/plotly/static/logo.svg
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
58 changes: 58 additions & 0 deletions config/plugins/visualizations/plotly_box/config/plotly_box.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,58 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="Box Plot (plotly.js)">
<description>Box Plot from Plotly Graphing Library.</description>
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.CSV</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<entry_point entry_point_type="script" src="../../plotly/static/dist/index.js" css="../../plotly/static/dist/index.css" />
<specs>
<variant>box</variant>
</specs>
<settings>
<input>
<name>x_axis_label</name>
<label>X-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>X-axis</value>
<placeholder>Axis label</placeholder>
</input>
<input>
<name>y_axis_label</name>
<label>Y-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>Y-axis</value>
<placeholder>Axis label</placeholder>
</input>
</settings>
<tracks>
<input>
<label>Pick a series color</label>
<name>color</name>
<type>color</type>
</input>
<input>
<label>Provide a label</label>
<name>name</name>
<type>text</type>
<placeholder>Data label</placeholder>
<value>Data label</value>
</input>
<input>
<name>y</name>
<label>Column of y-axis values</label>
<type>data_column</type>
<is_number>true</is_number>
</input>
</tracks>
</visualization>
63 changes: 63 additions & 0 deletions config/plugins/visualizations/plotly_box/static/logo.svg
View file
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
58 changes: 58 additions & 0 deletions config/plugins/visualizations/plotly_histogram/config/plotly_histogram.xml
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1,58 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE visualization SYSTEM "../../visualization.dtd">
<visualization name="Histogram (plotly.js)">
<description>Histogram from Plotly Graphing Library.</description>
<data_sources>
<data_source>
<model_class>HistoryDatasetAssociation</model_class>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.Tabular</test>
<test type="isinstance" test_attr="datatype" result_type="datatype">tabular.CSV</test>
<to_param param_attr="id">dataset_id</to_param>
</data_source>
</data_sources>
<params>
<param type="dataset" var_name_in_template="hda" required="true">dataset_id</param>
</params>
<entry_point entry_point_type="script" src="../../plotly/static/dist/index.js" css="../../plotly/static/dist/index.css" />
<specs>
<variant>histogram</variant>
</specs>
<settings>
<input>
<name>x_axis_label</name>
<label>X-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>X-axis</value>
<placeholder>Axis label</placeholder>
</input>
<input>
<name>y_axis_label</name>
<label>Y-Axis label</label>
<help>Provide a label for the axis.</help>
<type>text</type>
<value>Y-axis</value>
<placeholder>Axis label</placeholder>
</input>
</settings>
<tracks>
<input>
<label>Pick a series color</label>
<name>color</name>
<type>color</type>
</input>
<input>
<label>Provide a label</label>
<name>name</name>
<type>text</type>
<placeholder>Data label</placeholder>
<value>Data label</value>
</input>
<input>
<name>x</name>
<label>Column of x-axis values</label>
<type>data_column</type>
<is_number>true</is_number>
</input>
</tracks>
</visualization>
Loading

0 comments on commit 4fd6535

Please sign in to comment.