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[22.05] Add/remove/pin/unpin Python requirements #15159

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Dec 9, 2022
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[22.05] Add/remove/pin/unpin Python requirements #15159

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3 changes: 2 additions & 1 deletion packages/app/setup.cfg
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Expand Up @@ -54,7 +54,8 @@ install_requires =
lxml
Mako
Markdown
packaging
MarkupSafe
packaging<22
paramiko!=2.9.0,!=2.9.1
pebble
pulsar-galaxy-lib>=0.14.13
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4 changes: 2 additions & 2 deletions packages/data/setup.cfg
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Expand Up @@ -37,11 +37,11 @@ install_requires =
alembic
bdbag
bx-python
contextvars; python_version >= "3.6" and python_version < "3.7"
dnspython
galaxy-sequence-utils
h5py
isa-rwval
MarkupSafe
mrcfile
numpy
parsley
Expand All @@ -52,7 +52,7 @@ install_requires =
pysam
social-auth-core[openidconnect]==4.0.3
SQLAlchemy>=1.4.25,<2
tifffile<=2020.9.3 # Last version compatible with python 3.6
tifffile
typing-extensions
WebOb
packages = find:
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2 changes: 2 additions & 0 deletions packages/tool_util/setup.cfg
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Expand Up @@ -33,6 +33,8 @@ include_package_data = True
install_requires =
galaxy-util>=22.1
lxml
MarkupSafe
packaging<22
pydantic
PyYAML
sortedcontainers
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2 changes: 0 additions & 2 deletions packages/util/setup.cfg
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Expand Up @@ -35,9 +35,7 @@ install_requires =
boltons
docutils
importlib_resources
MarkupSafe
packaging<22 # packaging 22.0 dropped LegacyVersion
pycryptodome
pyparsing
PyYAML
requests
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1 change: 1 addition & 0 deletions pyproject.toml
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Expand Up @@ -71,6 +71,7 @@ mrcfile = "*"
nodeenv = "*"
nose = "*"
numpy = "*"
packaging = "<22" # packaging 22.0 dropped LegacyVersion
paramiko = "!=2.9.0, !=2.9.1" # https://github.com/paramiko/paramiko/issues/1961
Parsley = "*"
Paste = "*"
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