Add Elixir toolkit theme to CoDex

[supernord]

@bebatut / @paulzierep - could you please review? 😄

Completed:

• Add ETT elements
• Configure and deploy test site https://supernord.github.io/galaxy_codex/ (thanks for your help @bedroesb)
• Create data table for CoDex and format
• Updates to ETT (thanks @paulzierep and @bedroesb) Add searchBuilder option for DataTables ELIXIR-Belgium/elixir-toolkit-theme#292
• Add python script for merging availability across Galaxy instances and creating .yml files for ETT

Still to do:

• Update column names (based on changes during the hackathon)
• Update contributors list (CONTRIBUTORS.yml)
• Create custom folder for deployment of website, which is separate to /docs
• Merge columns and improve usability
• Add tutorial and workflow tables
• Add the ability to create community-specific tables that are subsets of the main CoDex

[paulzierep]

• Need to check with @bedroesb to add SearchBuilder Requires DateTime when used with dates.
• The servers got a 1 at the end

[supernord]

Thanks @paulzierep
@mthang found a solution to the DateTime issue
The number at the end is the value associated with each availability key in the metadata - suggestions for how to present this in the table? another column?

[supernord]

@paulzierep - do you think the date / time issue is being caused by the date being a string value?
e.g. in the tools.yml file the value is '2024-11-11'

[paulzierep]

I think: SearchBuilder Requires DateTime when used with dates means that the JS needs a DateTime package which is not there in the Elixir Toolkit, I asked @bedroesb to add it to the toolkit feature: ELIXIR-Belgium/elixir-toolkit-theme#292
Hope that solves it.

[paulzierep]

@supernord can you rebuild the website and check if the library works now, see: ELIXIR-Belgium/elixir-toolkit-theme#292

[bedroesb]

Tried it out locally. It should work now. I would suggets to add toc: false to the fronmatter of the md:

---
title: Tools
description: An interactive list of Galaxy tools created by the Galaxy CoDex.
datatable: true
sidebar: false
toc: false
---

This will prevent the table from jumping around after load.

I would also docs/_site in the .gitignore file to make it easier for local deployments.

[supernord]

thanks @bedroesb - that fixed the issue 😄