Create release 0.75.24

galaxyproject · Jul 4, 2024 · 5403ef9 · 5403ef9
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diff --git a/HISTORY.rst b/HISTORY.rst
@@ -5,6 +5,25 @@ History
 
 .. to_doc
 
+---------------------
+0.75.24 (2024-07-04)
+---------------------
+* Workflow best practices: check that creator identifiers are URIs (thanks to
+  `@elichad`_). `Pull Request 1458`_
+* Update pinning for Galaxy 24.1 (thanks to `@bernt-matthias`_). `Pull Request
+  1460`_
+* Add option to create a minimal markdown test report (thanks to
+  `@bernt-matthias`_). `Pull Request 1462`_
+* Increase worflow linting (thanks to `@lldelisle`_). `Pull Request 1463`_
+* Run CI tests against newer Galaxy versions (thanks to `@bernt-matthias`_).
+  `Pull Request 1466`_
+* Add the option to provide a history id to run the workflow in (thanks to
+  `@Delphine-L`_). `Pull Request 1461`_
+* Make sure that skip list does not get `['']` (if no skip is given) (thanks
+  to `@bernt-matthias`_). `Pull Request 1453`_
+* Tool linting add `--skip_file` and remove lxml schema validation (thanks to
+  `@bernt-matthias`_). `Pull Request 1420`_
+
 ---------------------
 0.75.23 (2024-05-08)
 ---------------------
@@ -2120,6 +2139,14 @@ History
   tools - and more experimental features involving Docker and Homebrew. 7d07782_
 
 .. github_links
+.. _Pull Request 1458: https://github.com/galaxyproject/planemo/pull/1458
+.. _Pull Request 1460: https://github.com/galaxyproject/planemo/pull/1460
+.. _Pull Request 1462: https://github.com/galaxyproject/planemo/pull/1462
+.. _Pull Request 1463: https://github.com/galaxyproject/planemo/pull/1463
+.. _Pull Request 1466: https://github.com/galaxyproject/planemo/pull/1466
+.. _Pull Request 1461: https://github.com/galaxyproject/planemo/pull/1461
+.. _Pull Request 1453: https://github.com/galaxyproject/planemo/pull/1453
+.. _Pull Request 1420: https://github.com/galaxyproject/planemo/pull/1420
 .. _Pull Request 1445: https://github.com/galaxyproject/planemo/pull/1445
 .. _Pull Request 1450: https://github.com/galaxyproject/planemo/pull/1450
 .. _Pull Request 1441: https://github.com/galaxyproject/planemo/pull/1441
@@ -3061,3 +3088,5 @@ History
 .. _@mstabrin: https://github.com/mstabrin
 .. _@paulzierep: https://github.com/paulzierep
 .. _@Kulivox: https://github.com/Kulivox
+.. _@Delphine-L: https://github.com/Delphine-L
+.. _@elichad: https://github.com/elichad
diff --git a/docs/commands/autoupdate.rst b/docs/commands/autoupdate.rst
@@ -47,6 +47,9 @@ Auto-update tool requirements by checking against Conda and updating if newer ve
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/commands/run.rst b/docs/commands/run.rst
@@ -232,6 +232,9 @@ Planemo command for running tools and jobs.
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/commands/shed_test.rst b/docs/commands/shed_test.rst
@@ -185,6 +185,9 @@ install these artifacts, and run the tool tests for these commands.
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/commands/test.rst b/docs/commands/test.rst
@@ -192,6 +192,9 @@ please careful and do not try this against production Galaxy instances.
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/commands/test_reports.rst b/docs/commands/test_reports.rst
@@ -26,6 +26,9 @@ from the structured test output (tool_test_output.json).
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/commands/workflow_lint.rst b/docs/commands/workflow_lint.rst
@@ -23,5 +23,7 @@ Check workflows for syntax errors and best practices.
                                       (e.g. passing --skip 'citations,xml_order'
                                       would skip linting of citations and best-
                                       practice XML ordering.
+      --iwc                           Check workflows directory with the standards
+                                      of iwc
       --help                          Show this message and exit.
     
diff --git a/docs/commands/workflow_test_on_invocation.rst b/docs/commands/workflow_test_on_invocation.rst
@@ -31,6 +31,9 @@ Run defined tests against existing workflow invocation.
                                       in CI)
       --test_output_markdown PATH     Output test report (Markdown style - for
                                       humans & computers)
+      --test_output_markdown_minimal PATH
+                                      Output test report (Minimal markdown style -
+                                      jost the table)
       --test_output_xunit PATH        Output test report (xunit style - for CI
                                       systems
       --test_output_junit PATH        Output test report (jUnit style - for CI

diff --git a/docs/standards b/docs/standards
diff --git a/planemo/__init__.py b/planemo/__init__.py
@@ -1,4 +1,4 @@
-__version__ = "0.75.24.dev0"
+__version__ = "0.75.24"
 
 
 PROJECT_NAME = "planemo"
+2 −2		docs/best_practices/management.rst
+1 −1		docs/best_practices/repositories.rst
+20 −56		docs/best_practices/tool_xml.rst