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Picrust2#3904

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bgruening merged 42 commits intogalaxyproject:maingalaxyproject/tools-iuc:mainfrom EngyNasr:picrust2EngyNasr/tools-iuc:picrust2Copy head branch name to clipboardMar 4, 2023

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Commits

Commits on Feb 10, 2023

• added macros file in the picrust2 tool

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  4939b96

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• added commnd lace seqs wrapper xml file in the picrust2 tool

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  faf0e99

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• updating macros and place_seqs xml files in the picrust2 tool

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  af4a01b

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• updating macros and place_seqs xml files in the picrust2 tool

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  90967ae

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• updated place_seq and added hsp wrappers

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  6744a35

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• Updating place_seqs and hsp now both have green outputs

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  d699dbc

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• Adding Metagenome pipeline wrapper

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  bf74b97

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• Removing the full pipeline since its redundant

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  60e4077

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• Adding the 4th wrapper pathway pipeline

  

  EngyNasr

  authored and

  bernt-matthias

  committed
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• Adding the 5th wrapper add_description and updating hsp and place_seqs

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  36e7a2e

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• Adding all wrappers, all succeed linting and testing

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  4b1abdd

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• Adding shed.yml file

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  ddc4fa1

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• updating the wrappers as per the comments, Next to do: the min and max values and checking the other test-data

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  672aacc

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• solving above mentioned issues

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  6119a72

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• changed as per comments, still the size of the seq fna is 600 not 500 kb

  

  EngyNasr

  authored and

  bernt-matthias

  committed
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• trial1 in solving combined chunked test result error

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  ad1a441

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• reducing size and adding count to the shuffle prediction tool's test

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  7c62b9a

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• trial2 in solving combined chunked test result error

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  e97e3d5

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• trial3 in solving combined chunked test result error

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  b488c9d

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• trial4 in solving combined chunked test result error

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  07252e3

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• changing as per new comments, still pathway pipeline more test case missing dure to test data

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  6cf181b

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• adding a full test to pathway pipeline and its test data

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  7fae84b

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• solving combined test chunks issue

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  c86fcdb

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• trying not to cheat :D

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  0458eac

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• .shed, macros and addDescription comments :D, stay tuned for the rest :D

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  ef74f91

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• addDescription new test data

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  54909f0

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• hsp comments and needed test data, almostttt arriving to 50% of the comments <3

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  33dd26a

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• Almostttt :D 2 wrappers left and another one to add

  

  EngyNasr

  authored and

  bernt-matthias

  committed
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• updating ftype in a test in metagenome pipeline

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  be800da

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• solving linting issue

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  18479fd

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• almostttt :D :D :D pathway pipeline comments are done

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  4f2d59e

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• All comments are done, remaining adding the full pipeline wrapper

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  e275bc7

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• adding a format to the intermediate output

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  f1c3225

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• updating formats to the intermediate output, almost about to finish the full pipeline :)

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  0e9595b

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• Adding the full pipeline wrapper, missing tests and updating other wrappers to include the bio tool introduced in the macros

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  0c32bf7

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• Adding test and test data, working but planemo t gives failed, so lets check it toether

  

  EngyNasr

  authored and

  bernt-matthias

  committed
  539c170

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• continue on picrust2

  bernt-matthias

  committed
  10288a3

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• put tool params in macros

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  bernt-matthias

  committed
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• macros for outputs

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  bernt-matthias

  committed
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• bump to latest version

  bernt-matthias

  committed
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Commits on Feb 13, 2023

• Fix boolean

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  bernt-matthias

  and

  gallardoalba

  authored
  465ba47

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Commits on Feb 14, 2023

• Revert "Fix boolean"

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  bernt-matthias

  committed
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